PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35072.3 Da PI: 9.4588 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl XP_009625117.1 14 KGPWSTKEDLLLSNYIKENGEGQWRNLPKKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_009625117.1 67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.638 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.54E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.138 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRAPCCAKE GLRKGPWSTK EDLLLSNYIK ENGEGQWRNL PKKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSAG 120 IEPKVNKIFS KYCPKKEPKK QAKIEKPRKK QDKKKNKKKK DQSLVQNISD SPQVVFVPKP 180 IRISSCRNHS VEDVALLSTS SSNSSEEADK RASRCTKLPL CATKSADESD HIGSYVRSLT 240 DEEGKIEEVS FIPCATNLFD EVPLNENMLE KVYEEYLQLL SEKCYLQDNQ LDDDLLAGNV 300 FDHSMLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 5e-91 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 5e-91 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625117.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_016505505.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A1S4CWH7 | 0.0 | A0A1S4CWH7_TOBAC; myb-related protein 308-like | ||||
STRING | XP_009625117.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-65 | myb domain protein 5 |