PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624902.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 373aa MW: 43093.2 Da PI: 6.3281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.6	9.5e-34	113	256	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++ XP_009624902.1 113 ATGRKDRHSKVSTASGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKKAKAAIDALENNpfqvfsrqidstnkalnwrtinveneegqf 207 589**************************************************************888888766655555555444443333333 PP TCP 66 ............ssssaseceaesssssasnsssg..................................k 89 s + + XP_009624902.1 208 aldqspkvsqeyS---------------------DipkyecgvqndspignlsllssandpkiqfvsdfQ 256 3333322222221.....................022333333333344444444333333444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-30	114	267	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.19	116	174	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNHQLQVSDK EDKSSSSEEE EEEEKEKEED FFQENILQIH YQNQHFHQFY QKQTDSHYAK 60 WANFTSPALV PKHQNNTQCP SYKEEIKKVS PKKKPKRTNT DVIEVHRSRI VRATGRKDRH 120 SKVSTASGPR DRRVRLSPNT AIQFYDVQDR LGYDRPSKAI DWLIKKAKAA IDALENNPFQ 180 VFSRQIDSTN KALNWRTINV ENEEGQFALD QSPKVSQEYS DIPKYECGVQ NDSPIGNLSL 240 LSSANDPKIQ FVSDFQRYQQ GHFHSDTKKQ AQDSFFNFQS SQDQSILSSN NNLELREDST 300 FSFLSHNFPS VLGQNQLFYQ RESLQSSAFS VPLNTQFQTV SYANNGFVNE EEEHGTFSTP 360 SAINATTLLH YQD

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNHQLQVSDK EDKSSSSEEE EEEEKEKEED FFQENILQIH YQNQHFHQFY QKQTDSHYAK  60
WANFTSPALV PKHQNNTQCP SYKEEIKKVS PKKKPKRTNT DVIEVHRSRI VRATGRKDRH  120
SKVSTASGPR DRRVRLSPNT AIQFYDVQDR LGYDRPSKAI DWLIKKAKAA IDALENNPFQ  180
VFSRQIDSTN KALNWRTINV ENEEGQFALD QSPKVSQEYS DIPKYECGVQ NDSPIGNLSL  240
LSSANDPKIQ FVSDFQRYQQ GHFHSDTKKQ AQDSFFNFQS SQDQSILSSN NNLELREDST  300
FSFLSHNFPS VLGQNQLFYQ RESLQSSAFS VPLNTQFQTV SYANNGFVNE EEEHGTFSTP  360
SAINATTLLH YQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	121	174	1	54	Putative transcription factor PCF6
5zkt_B	1e-18	121	174	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624902.1	0.0	PREDICTED: transcription factor TCP17-like
TrEMBL	A0A1S4ADI8	0.0	A0A1S4ADI8_TOBAC; transcription factor TCP17-like
STRING	XP_009624902.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-24	TCP domain protein 10