PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009624591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27598.7 Da PI: 6.5215 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +vk++G ++W+ a+ ++Rt+k+c++rw +yl XP_009624591.1 9 KGPWTEQEDLQLVFYVKMFGDRRWDFLAKVSDLKRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++ XP_009624591.1 62 RGKMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.69 | 4 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-13 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-8 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 26.959 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MVQEEITRKG PWTEQEDLQL VFYVKMFGDR RWDFLAKVSD LKRTGKSCRL RWVNYLNPAL 60 KRGKMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMRKQ AQDERNKNKA 120 SISPSSSFSN SSSSSANSPT VDSTPDNEQN ERNSNDGLEH LQLAAGENKV HDHESGEKNM 180 MVYSLDEIWK DVESSQDTDQ TMNKLPVMAS PLWDYCPDSL WMTDYYYDNQ DISFFKG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-29 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013044 | 5e-38 | BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence. | |||
GenBank | HG975445 | 5e-38 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 5e-38 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624591.1 | 1e-179 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 5e-69 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1S3ZTZ3 | 1e-177 | A0A1S3ZTZ3_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009624591.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.1 | 5e-69 | myb domain protein 48 |
Publications ? help Back to Top | |||
---|---|---|---|
|