PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 34646.7 Da PI: 7.433 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 21 | 118 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRR+Rlsa++a++f+d+qd+LG+dk+sk+++WL+++ak ai++l+++ + ++++++ + XP_009624545.1 21 TGQKDRHSKVYTAKGPRDRRIRLSALTAIQFYDMQDRLGYDKPSKAVDWLIKKAKNAIDKLVELptwnpsddavlkniP--------TSTEREVG 107 799*************************************************************655544444443221........11111111 PP TCP 83 snsssg....k 89 s+ +++ + XP_009624545.1 108 SSGNIAlephQ 118 11111122220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-34 | 21 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.119 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MKRATEGEIV QVEGGRILRS TGQKDRHSKV YTAKGPRDRR IRLSALTAIQ FYDMQDRLGY 60 DKPSKAVDWL IKKAKNAIDK LVELPTWNPS DDAVLKNIPT STEREVGSSG NIALEPHQQS 120 KFSSRFLLQR QLAENPTSDT SYVMPAVEPE TSSVADTSKS FFPINSGTSL MNLLSFPHEA 180 MSRDSIQTED LGLSLHTNLH DQNSNHSANL VNFEANYNPR MANWIPHQQF LSQGGIFSQR 240 EPLQSNFSRL ISHAWELQQP MASAEHKSSI SNSYFNGHFQ FPSRLIQGEE DINGVICIKP 300 SSGSSSFQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624544.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X1 | ||||
Refseq | XP_009624545.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X1 | ||||
Swissprot | Q8LPR5 | 8e-48 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A1S4CCT4 | 0.0 | A0A1S4CCT4_TOBAC; transcription factor TCP4-like | ||||
STRING | XP_009624544.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-50 | TCP family protein |