PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624518.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 423aa    MW: 46891.7 Da    PI: 5.108
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573106.42.2e-33172264397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     ++rlws+eD++++L+G+ +fka++g++p + d++af++f+k++++++vsksq+++K+rrLKkKf ++vk     ++p+fsk+hd  +fe+skkiW
  XP_009624518.1 172 PSRLWSDEDQLAILKGMAEFKAQKGSEPNAtDMSAFHDFIKGKLQVEVSKSQVTDKLRRLKKKFLTNVKI---SDDPVFSKPHDYLMFEFSKKIW 263
                     68************************99988**************************************9...99******************** PP

          DUF573  97 g 97 
                     g
  XP_009624518.1 264 G 264
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.0E-29173264IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAPKSKSSLV DQPPSASSSE EQDTQQAEES QEEEEAQSEE EESGEEESEE EEEEPKTAPP  60
LEKKPTSQKP LQTPQNKPQS SSSSESGTED GSGSDSDSDS GQSQPSPSAS DFTVKPSISA  120
AKSPSKPTSK RPQETQQQQA QKEKQSRPNK KPKISEEDSK VSEEKKSAAT TPSRLWSDED  180
QLAILKGMAE FKAQKGSEPN ATDMSAFHDF IKGKLQVEVS KSQVTDKLRR LKKKFLTNVK  240
ISDDPVFSKP HDYLMFEFSK KIWGGAGTSD TNGVNENVNN GTNGKAKKTV DVVKKSTSEP  300
KKSAKVSTFT KPKDDEKPKE DEKRAAVKEV DKEDVVVKGD DQRDFRSKYP NLAASFSMPA  360
MSAIFPNGVD IFKENMNLIG SDKAKVLEEK WKKLHDDEND IMLKRLDLIR EHYKLVVDAR  420
RGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624518.10.0PREDICTED: STOREKEEPER protein-like
RefseqXP_016493197.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ94IK21e-141STK_SOLTU; STOREKEEPER protein
TrEMBLA0A1S4BWD90.0A0A1S4BWD9_TOBAC; mediator-associated protein 1-like
STRINGXP_009624518.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-20DNA-binding storekeeper protein-related transcriptional regulator