PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624514.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 368aa    MW: 41977.2 Da    PI: 7.6555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-062473091455
                     HHHHHHHHHHHCTSCCC........................TTS-STCHHHHHHHHHHHHHHH CS
             HLH  14 driNsafeeLrellPkas.....................kapskKlsKaeiLekAveYIksLq 55 
                     dr+ s+f+ L+el+ ++s                      ap +K + a++L++A+ YI+ Lq
  XP_009624514.1 247 DRMSSGFAGLQELIHNPSnssnkvrkeklghrisalhrlVAPFGKTDTASVLTEAIGYIQFLQ 309
                     7999**********998889*******************99*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-5263312No hitNo description
SuperFamilySSF474592.22E-10264321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0043265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-7265317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQSANIRWRK CSFEKELNLA IQELFFFPLR YLNNCIQVCG HMDSRNLYHL HQLQQRQLAG  60
YPLFTGVQAL HDWNPSMTSE EEYYYKGEMK RIFQNNISSE ELWKSSSSID TFPLMNSSMF  120
QNGHQSSNEQ LDYKNSKGYI SNDYFLKMKD TNGLSNSLFK ESYFKQEQHH VFDLNENLLS  180
EDHSYMNNAK TCIGFSGLAA AAATPNYISS HLEHSDFQDL KKLGFNGLNF KNSIGDHSTS  240
FGHFCTDRMS SGFAGLQELI HNPSNSSNKV RKEKLGHRIS ALHRLVAPFG KTDTASVLTE  300
AIGYIQFLQD QILTLSMPYA KSSKGKLHQI NLKDSSIDMK GQAVQDLKSR GLCLVPMSFS  360
SYITYSCD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624514.10.0PREDICTED: uncharacterized protein LOC104115541 isoform X4
TrEMBLA0A1S4BP270.0A0A1S4BP27_TOBAC; transcription factor bHLH110-like
STRINGXP_009624505.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-28bHLH family protein