PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26765.2 Da PI: 7.5042 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +Wv+eIr+p +k+ r++lg+f t+e Aa+a++ a+++l+g XP_009624061.1 60 FYRGVRRRN-GDKWVCEIREP---NKKSRIWLGTFSTPEIAARAHDVAALALRG 109 7*****877.9*********9...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.931 | 60 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 60 | 118 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-31 | 60 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-30 | 61 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 61 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 61 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-30 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 1.4E-7 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MNFEDDQTSN SSCSSSDHDI LDKEKNFNLS SYSMNVIIKP SLHNKRRAGR KKFKETRHPF 60 YRGVRRRNGD KWVCEIREPN KKSRIWLGTF STPEIAARAH DVAALALRGT KASLNFPESS 120 WSLPKAQSSS PHDIQIAALQ VSNKVVSSPL KPSMSYLKLE ESSCFKSPKD DQENSLKGYN 180 DSCELMEFVD EEAMFNMPIL IDSMAEGMLM TPPAMKRGFN WGDVEENVEF TLWKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 58 | 117 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-47 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624061.1 | 1e-176 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 7e-54 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 7e-54 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1S3Y762 | 1e-174 | A0A1S3Y762_TOBAC; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_009624061.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 7e-43 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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