PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009623902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 299aa MW: 33487 Da PI: 7.5339 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.4 | 7.9e-32 | 51 | 197 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + XP_009623902.1 51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLqippgslnpnlysmlgiggsqinkevglknt 145 689*************************************************************6666655555555555553333333322221 PP TCP 66 .ssssaseceaesssssasnsssg................................kaaksaakskksqksaa 105 s + ++++++++ +s+++++ XP_009623902.1 146 sS---------------------TsinwdvplepsnnvalpynsnflkwdpsnlslAHSENHHNVTSSSHQHE 197 10.....................12224444444444455555555555555455433333334444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-28 | 53 | 167 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.019 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MITREVNKQE GDPNKDGNKS TPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV 60 CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLQIPPGS 120 LNPNLYSMLG IGGSQINKEV GLKNTSSTSI NWDVPLEPSN NVALPYNSNF LKWDPSNLSL 180 AHSENHHNVT SSSHQHEDIH NFNVMSMPIG SQVLVYPQGL PQSFFHPHNI NAGASSDQFD 240 PREINFQMLS SENPMSSANS FRHSIDSTNQ SHVRPFHFLP SQNSEGREPN EDREFHNSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-108 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623901.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_009623902.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_016436988.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_016436989.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | A0A1S3XAZ7 | 0.0 | A0A1S3XAZ7_TOBAC; transcription factor TCP13-like | ||||
STRING | XP_009623901.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 7e-46 | plastid transcription factor 1 |