PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623901.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 299aa    MW: 33487 Da    PI: 7.5339
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.47.9e-32511972105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                               
  XP_009623901.1  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLqippgslnpnlysmlgiggsqinkevglknt 145
                     689*************************************************************6666655555555555553333333322221 PP

             TCP  66 .ssssaseceaesssssasnsssg................................kaaksaakskksqksaa 105
                      s                     +                                ++++++++  +s+++++
  XP_009623901.1 146 sS---------------------TsinwdvplepsnnvalpynsnflkwdpsnlslAHSENHHNVTSSSHQHE 197
                     10.....................12224444444444455555555555555455433333334444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2853167IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01953111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MITREVNKQE GDPNKDGNKS TPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLQIPPGS  120
LNPNLYSMLG IGGSQINKEV GLKNTSSTSI NWDVPLEPSN NVALPYNSNF LKWDPSNLSL  180
AHSENHHNVT SSSHQHEDIH NFNVMSMPIG SQVLVYPQGL PQSFFHPHNI NAGASSDQFD  240
PREINFQMLS SENPMSSANS FRHSIDSTNQ SHVRPFHFLP SQNSEGREPN EDREFHNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1958112155Putative transcription factor PCF6
5zkt_B3e-1958112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-108HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623901.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_009623902.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_016436988.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_016436989.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A1S3XAZ70.0A0A1S3XAZ7_TOBAC; transcription factor TCP13-like
STRINGXP_009623901.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.27e-46plastid transcription factor 1