PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623591.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 497aa MW: 55508.2 Da PI: 5.6345

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.5	1.6e-36	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sws++ nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_009623591.1 17 FLSKTYDMVDDPSTDSVVSWSKSHNSFVVWNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHKHLLKS 102 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k + XP_009623591.1 103 ISRRKPS 109 **976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-39	9	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-35	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-61	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.0E-32	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-20	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-20	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-20	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDGVYENTAV GNSPPPFLSK TYDMVDDPST DSVVSWSKSH NSFVVWNVPE FARDILPKYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ 120 VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELVKLKQ QQQATDHQMQ TVGQRVQIME 180 KRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRRLTGMNKK RRLPDQDEEN VAGNPVNMLR 240 DGRIVRYQPS MNEAAKALLR QILKINTPGR LDNRFKNTNG LLTDNPLSPK NTLSGDTSSR 300 ISGVTLSEVL SMSSQSHIMS DSGFPFNSCS SVMSESQSST TVVPGEAKVP KLPETDALNS 360 LTDHDLPEFS QVQRINRQET FGITGLKRSE TGNVPYIDNT QAILDGVTPV APDGFSADTH 420 VDVLLDDVPK LPAINDIFWD QILSASPLSG DTDEIGMEDG LEKEEDFLGV QENDLDKLNH 480 MCHLTEQMGL LSSAAQI

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDGVYENTAV GNSPPPFLSK TYDMVDDPST DSVVSWSKSH NSFVVWNVPE FARDILPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ  120
VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELVKLKQ QQQATDHQMQ TVGQRVQIME  180
KRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRRLTGMNKK RRLPDQDEEN VAGNPVNMLR  240
DGRIVRYQPS MNEAAKALLR QILKINTPGR LDNRFKNTNG LLTDNPLSPK NTLSGDTSSR  300
ISGVTLSEVL SMSSQSHIMS DSGFPFNSCS SVMSESQSST TVVPGEAKVP KLPETDALNS  360
LTDHDLPEFS QVQRINRQET FGITGLKRSE TGNVPYIDNT QAILDGVTPV APDGFSADTH  420
VDVLLDDVPK LPAINDIFWD QILSASPLSG DTDEIGMEDG LEKEEDFLGV QENDLDKLNH  480
MCHLTEQMGL LSSAAQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-26	15	106	27	129	Heat shock factor protein 1
5d5v_B	3e-26	15	106	27	129	Heat shock factor protein 1
5d5v_D	3e-26	15	106	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623591.1	0.0	PREDICTED: heat stress transcription factor A-1b
Refseq	XP_016465973.1	0.0	PREDICTED: heat stress transcription factor A-1b-like
Swissprot	Q84T61	1e-152	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1S3ZNY7	0.0	A0A1S3ZNY7_TOBAC; heat stress transcription factor A-1b-like
STRING	XP_009623591.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-133	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]