PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009623542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 501aa MW: 56003.9 Da PI: 6.6805 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.7 | 2.9e-09 | 198 | 235 | 5 | 42 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k rr+++NReAA++sR+RKka++++Le L++ XP_009623542.1 198 KTLRRLAQNREAAKKSRLRKKAYVQQLESSRIRLSQLE 235 7789***********************98655555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.8E-6 | 194 | 271 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.105 | 196 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-6 | 198 | 236 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 5.63E-22 | 198 | 250 | No hit | No description |
SuperFamily | SSF57959 | 1.88E-6 | 198 | 240 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-7 | 199 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 201 | 216 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.7E-31 | 279 | 353 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MVLLRPKPKN GLKGVCMASE GIGETGLTNS GPSNLHNMPY AVFRGLNPAS TSFMYHSTPN 60 NQEGSFDFGE LEEAFALQGF KINNDEAKAS LYAAATGKPA ATLDMFPSWP MRFQETPREN 120 SKSREEEIST DSGSLSSRAQ GHLEPESPIS RKASSEQNQL QITQQQQQQQ LHQEMSSDNN 180 PRTENLQTEL ASKPNTEKTL RRLAQNREAA KKSRLRKKAY VQQLESSRIR LSQLEQELQR 240 ARSQGVFLGG GTSAGANISS GAALFDMEYS RWLDDDHRHM SELRTALQTH LSDGDLRLIV 300 DGYIAHYDEI FSLKGVAAKC DVFHLITGAW TTPAERCFLW MGGFRPSELI KMLIGQLDPL 360 TEQQLMGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTVVSG SINDGMHHMA LALGKLSNLE 420 GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIPDDS 480 SCQTTTELQM VHSSQNHFSN F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT693387 | 0.0 | KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623542.1 | 0.0 | PREDICTED: transcription factor TGA2.2-like isoform X2 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A1S3Y3E9 | 0.0 | A0A1S3Y3E9_TOBAC; transcription factor TGA2-like isoform X1 | ||||
STRING | XP_009623541.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-176 | bZIP family protein |
Publications ? help Back to Top | |||
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