PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623541.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 516aa MW: 57576.6 Da PI: 6.9267

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.6e-10	213	250	5	42
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k rr+++NReAA++sR+RKka++++Le L++ XP_009623541.1 213 KTLRRLAQNREAAKKSRLRKKAYVQQLESSRIRLSQLE 250 7789***********************98655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-7	207	255	No hit	No description
SMART	SM00338	3.8E-7	209	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	211	255	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-7	213	251	IPR004827	Basic-leucine zipper domain
CDD	cd14708	9.55E-22	213	265	No hit	No description
SuperFamily	SSF57959	8.84E-7	213	255	No hit	No description
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.1E-31	294	368	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVLLRPKPKN GLKGVCMASE GIGETGLTNS GPSNLHNMPY AVFRGLNPAS TSFMYHSTPN 60 NQEGSFDFGE LEEAFALQGF KINNDEAKAS LYAAATGKPA ATLDMFPSWP MRFQETPREN 120 SKSREEEIST DSGSLSSRAQ GHLEPESPIS RKASSEQNQL QITQQQQQQQ LHQEMSSDNN 180 PRTENLQTEL ASKPNTEKRK GAGSTSERMA DPKTLRRLAQ NREAAKKSRL RKKAYVQQLE 240 SSRIRLSQLE QELQRARSQG VFLGGGTSAG ANISSGAALF DMEYSRWLDD DHRHMSELRT 300 ALQTHLSDGD LRLIVDGYIA HYDEIFSLKG VAAKCDVFHL ITGAWTTPAE RCFLWMGGFR 360 PSELIKMLIG QLDPLTEQQL MGIYSLQQSS QQAEEALSQG LEQLQQSLID TVVSGSINDG 420 MHHMALALGK LSNLEGFVRQ ADNLRQQTLH QLHRILTVRQ AARCFLVIGE YYGRLRALSS 480 LWLSRPRETL IPDDSSCQTT TELQMVHSSQ NHFSNF

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVLLRPKPKN GLKGVCMASE GIGETGLTNS GPSNLHNMPY AVFRGLNPAS TSFMYHSTPN  60
NQEGSFDFGE LEEAFALQGF KINNDEAKAS LYAAATGKPA ATLDMFPSWP MRFQETPREN  120
SKSREEEIST DSGSLSSRAQ GHLEPESPIS RKASSEQNQL QITQQQQQQQ LHQEMSSDNN  180
PRTENLQTEL ASKPNTEKRK GAGSTSERMA DPKTLRRLAQ NREAAKKSRL RKKAYVQQLE  240
SSRIRLSQLE QELQRARSQG VFLGGGTSAG ANISSGAALF DMEYSRWLDD DHRHMSELRT  300
ALQTHLSDGD LRLIVDGYIA HYDEIFSLKG VAAKCDVFHL ITGAWTTPAE RCFLWMGGFR  360
PSELIKMLIG QLDPLTEQQL MGIYSLQQSS QQAEEALSQG LEQLQQSLID TVVSGSINDG  420
MHHMALALGK LSNLEGFVRQ ADNLRQQTLH QLHRILTVRQ AARCFLVIGE YYGRLRALSS  480
LWLSRPRETL IPDDSSCQTT TELQMVHSSQ NHFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT693387	0.0	KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623541.1	0.0	PREDICTED: transcription factor TGA2.1-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3Y3E9	0.0	A0A1S3Y3E9_TOBAC; transcription factor TGA2-like isoform X1
STRING	XP_009623541.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]