PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 698aa MW: 76158.7 Da PI: 7.1751 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 262 | 282 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg XP_009622998.1 262 PCPEFKK-GACAKGDSCEYAHG 282 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.18E-14 | 26 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.6E-10 | 66 | 137 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.0E-16 | 68 | 175 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0083 | 70 | 100 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.361 | 70 | 140 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.31E-13 | 72 | 140 | No hit | No description |
SMART | SM00248 | 8.3E-5 | 105 | 137 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.85 | 105 | 140 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 254 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 262 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.634 | 292 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MCSSSKSKVC PFDLNMDKKD GASRNCSKLL ELSASDDLSG FICEVEKGCG VDELSFWYGR 60 KFGSKKMGFE ERTPLMIASM YGSTEVLRFI IGTGKVDVNR ACGSDGATAL HCAAAGGSES 120 SIEVVKILID ASADVNACDS SENRPCEVIA SYPKWLRNSK RKSLELLLNG SLAELAELEE 180 EEGKAVIQTT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKGDSCEYA HGVFESWLHP AQYRTRLCKD 300 ETGCSRKVCF FAHKHEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMMLPTT 360 TTSTPPMSPA ATCSSPMGGN MWQGKVNLTP PALQLPGSRL KTSLNARDLD LDMEMLGLES 420 IRTQQQLRQQ LIDEMAGLSS PSYWKNDNRM GDMKPTNLDD VFGSLDSQLL SQLQGLSPRM 480 TSNTNSQLYS PSVSHMQGVS PKVASNTSQL QSPTGLQMRQ NMNQFQGSYS NMSQSSSPLR 540 KPSTYGFDSS AAVAAAVMNS RSASFAKQRS QSFIDRSGIG HRSGPNGVAN SPPLMSSNMS 600 DWGSPTGKLE WGFNSEDTNK LKRSQSFGFR GGNAAPTRSP IAPSQVNEPD VSWVHSLVKD 660 VSSTGTGLYS SEQKRGSVHD AIPPWLEQMY IDQERIVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM507320 | 0.0 | KM507320.1 Petunia x hybrida CCCH-type zinc-finger protein (TZF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622998.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_016493626.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A1S4BXJ5 | 0.0 | A0A1S4BXJ5_TOBAC; zinc finger CCCH domain-containing protein 29-like | ||||
STRING | XP_009622998.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |