PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622679.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 903aa MW: 101135 Da PI: 5.7153

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.1	9.9e-30	582	633	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le l++yF++++kdAAk++gvc+T+LKriCRqyGIkRWP+Rkik++ XP_009622679.1 582 AEKTITLEILQQYFAGSLKDAAKSIGVCPTTLKRICRQYGIKRWPSRKIKKV 633 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	570	653	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-25	585	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.4E-23	798	886	No hit	No description
SMART	SM00666	3.9E-24	802	885	IPR000270	PB1 domain
PROSITE profile	PS51745	25.619	802	886	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-21	803	881	No hit	No description
CDD	cd06407	1.40E-39	804	885	No hit	No description
Pfam	PF00564	1.0E-18	804	883	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MDESVIPSNP LLTNQSDYLM DLDYMDGLLL EGCWLETTDG NEFMQNSPAT FNAPFDSSFM 60 WPNTIDTNSV DFSEIPSKDN QQEKQIQLFG ENVNNAMCTS GQSENHLVEA PELNRRWWIG 120 PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR RVLSTTDQPF LLDLNCPRLA 180 NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR FFRSEEYPRV EHAQQYDVRG 240 TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR PELESVCEAL EAVNLRTSEV STTQNAKECD 300 LSYQPALSEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC RHSEENLIHC VSTEDSACYV 360 ADPHVRGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT SYSKTEYPLS HHAQMFGLQA 420 AVAIRLRSIS TGSCDFVLEF FLPSDCRNPE EHRRMLTSLS IIIQNVCRTL RVVTDKELQE 480 EAVSIGEAAN PSFIRSNKEH TETSQERTSW TSCDAEFQES STVVSAFQDE KPDETLRKEP 540 VEFRHHNDSG YGMNFALNEN RCASGEGVSR NGKKGDRRRT KAEKTITLEI LQQYFAGSLK 600 DAAKSIGVCP TTLKRICRQY GIKRWPSRKI KKVGHSLQKI QRVIDSVQGA SGSLQIESFY 660 SNFPVLASPN VSRLSPFADS MSNEHQKALN AQQEGCVMSP HAAASKSPSS SCSRSSSSSQ 720 CCSSGTKPQS SPLSIAGNDD PIVQEESVDN TVKRVKSEPE LHLSSEALKI LPRSQSHACV 780 AENPKSESLL VKKGPLRSQE EAPRVKVTHG EEKIRFRMQN SWRYSELLRE ITRRFGIDDP 840 SGLQLKYMDD DSEWVLLTCD ADLEECIDVC MSSQNQMIKL ILVRDSQHHI GSSFGSSSPI 900 LVQ

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MDESVIPSNP LLTNQSDYLM DLDYMDGLLL EGCWLETTDG NEFMQNSPAT FNAPFDSSFM  60
WPNTIDTNSV DFSEIPSKDN QQEKQIQLFG ENVNNAMCTS GQSENHLVEA PELNRRWWIG  120
PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR RVLSTTDQPF LLDLNCPRLA  180
NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR FFRSEEYPRV EHAQQYDVRG  240
TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR PELESVCEAL EAVNLRTSEV STTQNAKECD  300
LSYQPALSEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC RHSEENLIHC VSTEDSACYV  360
ADPHVRGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT SYSKTEYPLS HHAQMFGLQA  420
AVAIRLRSIS TGSCDFVLEF FLPSDCRNPE EHRRMLTSLS IIIQNVCRTL RVVTDKELQE  480
EAVSIGEAAN PSFIRSNKEH TETSQERTSW TSCDAEFQES STVVSAFQDE KPDETLRKEP  540
VEFRHHNDSG YGMNFALNEN RCASGEGVSR NGKKGDRRRT KAEKTITLEI LQQYFAGSLK  600
DAAKSIGVCP TTLKRICRQY GIKRWPSRKI KKVGHSLQKI QRVIDSVQGA SGSLQIESFY  660
SNFPVLASPN VSRLSPFADS MSNEHQKALN AQQEGCVMSP HAAASKSPSS SCSRSSSSSQ  720
CCSSGTKPQS SPLSIAGNDD PIVQEESVDN TVKRVKSEPE LHLSSEALKI LPRSQSHACV  780
AENPKSESLL VKKGPLRSQE EAPRVKVTHG EEKIRFRMQN SWRYSELLRE ITRRFGIDDP  840
SGLQLKYMDD DSEWVLLTCD ADLEECIDVC MSSQNQMIKL ILVRDSQHHI GSSFGSSSPI  900
LVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622679.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_009622680.1	0.0	PREDICTED: protein NLP5-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A1S4CYQ5	0.0	A0A1S4CYQ5_TOBAC; protein NLP5-like
STRING	XP_009622679.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein