PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29328.4 Da PI: 8.982 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l ++v+ +G g W+ ++ g++R++k+c++rw +yl XP_009622647.1 11 KGAWTKEEDEILMNYVQIHGVGKWNILCKKAGLNRCGKSCRLRWINYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eEd l+++++ lG++ W++Ia+ ++ gRt++++k++w++ XP_009622647.1 64 RGNFSLEEDNLIINLHSSLGNK-WSKIASQLP-GRTDNEIKNHWNT 107 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.093 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.4E-32 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-11 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 27.331 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-12 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 66 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSNNIRSLN KGAWTKEEDE ILMNYVQIHG VGKWNILCKK AGLNRCGKSC RLRWINYLRP 60 DIKRGNFSLE EDNLIINLHS SLGNKWSKIA SQLPGRTDNE IKNHWNTKLS KKLNLLGIDP 120 KTHKPIPNFC LINPLQVSPT LNMDNSTNPW TNLLDFTQLA RLQQLQFQTI LQTINNITSF 180 PSNLFMPNNY PIQDDMNRYY NYNNFIPDNS ETCFQGGLIS PEILNFNSIN PQTSTPNYQL 240 ASLPYLNTSP MCSFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 8 | 113 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622647.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A0L9TNE7 | 2e-60 | A0A0L9TNE7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R3A3 | 2e-60 | A0A0S3R3A3_PHAAN; Uncharacterized protein | ||||
STRING | XP_009622647.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-58 | myb domain protein 9 |