PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009622645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 39646.3 Da PI: 5.6767 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 9.6e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d++k+ G +W +I+++ g++R++k+c++rw++yl XP_009622645.1 17 KGPWTEDEDEKLIDYIKKNGHTNWQLIPKKAGLKRCGKSCRLRWNNYL 64 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e++++++ lG++ W++Ia++++ gRt++++k++++++l XP_009622645.1 70 RGGFSDEEEEIIINLHSVLGNK-WSRIANHLP-GRTDNEIKNFYNTHL 115 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.559 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.86E-14 | 19 | 64 | No hit | No description |
SMART | SM00717 | 7.6E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.257 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRYPCCKLD DDDDLKKGPW TEDEDEKLID YIKKNGHTNW QLIPKKAGLK RCGKSCRLRW 60 NNYLRPDIKR GGFSDEEEEI IINLHSVLGN KWSRIANHLP GRTDNEIKNF YNTHLKKKLL 120 KLGIDPKTHK PISDFDSLLK FSHQFTSTSN YFVSLASSLR LQAHFTLLAK IQQLLQSPLL 180 AINSNLFSSI QDNFLSNPNP PLFESLRYEG DQPQFLDSSL ANYITTIPCL DNTNSLPNYD 240 SSISNSSEVP SGVSDKIRTI QRRIASPSLY NDNMQKSRNG SNFSELCQAN ELNSNENQAE 300 GLAIRASNCN LNQNFIPTFS ELDDDMAAWE IPQDDEEINT FWNTIFQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 14 | 119 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622645.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | Q9SBF3 | 6e-69 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A1S4BJ20 | 0.0 | A0A1S4BJ20_TOBAC; myb-related protein 315-like | ||||
STRING | XP_009622645.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-70 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|