PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622533.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 447aa    MW: 47743.2 Da    PI: 8.053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-11427226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    + e+Cr+f+r G C+yG+rCkF H+
  XP_009622533.1  4 RKEPCRNFLR-GSCQYGERCKFLHV 27
                    789*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.215229IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-5429IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-8627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPPRKEPCRN FLRGSCQYGE RCKFLHVAQQ QPKPNPFGFG SQPSNFQSTN LQQTKSNPYG  60
FGVQNNFQSR GSNDLGPKQS QYKPFENKWT RSTSTNSSSS RQSDNQPVAP NHTCTDSDSC  120
RRQIMEDFNN EKPMWLLTCY GHRKNGPCDV TGDVSYEELR AAAYDDAKRG QSLMSIVERE  180
RNMLNSKAAE FENLLRNYVA PSTSVPNGQS PFPGAAPNAS LIAQSPLPGT TPNASLSAQS  240
PFPGTALNAS LSAQSPFPGT TPNASLSAQS PFPGAAPNAS LSDQSSFPPS ASSFSQLGAL  300
LNTGASAPTN TFGKPSTLGN SVKTSSSSGA NAFSFGNAAG SGSFGFGSQV TSQSHQNPLT  360
PSNISASSER NPFSTSTTSQ HFPNPSSDQL PTPQGHFSAS VAVSPFNINL MNAASTEEFS  420
GDNSIWTKKE WKIGEIPEEA PPDKYIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8987750.0AB898775.1 Nicotiana benthamiana NbCG1b mRNA for nuclear pore complex protein CG1b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622533.10.0PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLA0A1S4D1U90.0A0A1S4D1U9_TOBAC; zinc finger CCCH domain-containing protein 16-like isoform X1
STRINGXP_009622533.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-61C3H family protein