PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1122aa MW: 121304 Da PI: 8.1097 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.9 | 3.7e-07 | 446 | 463 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH G+C pC XP_009622484.1 446 CGVHRCQAVCHSGDCAPC 463 ****************** PP | |||||||
2 | zf-NF-X1 | 18.6 | 4.1e-06 | 542 | 560 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_009622484.1 542 CGQHSCESLCHSGHCPPCL 560 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.2E-7 | 145 | 216 | No hit | No description |
PROSITE profile | PS50016 | 8.831 | 154 | 215 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.48 | 157 | 213 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 157 | 212 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 4.72E-6 | 246 | 307 | No hit | No description |
SMART | SM00438 | 0.023 | 269 | 287 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 271 | 286 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.10E-12 | 314 | 362 | No hit | No description |
SMART | SM00438 | 0.018 | 324 | 343 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.7E-4 | 324 | 341 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.53E-8 | 378 | 423 | No hit | No description |
SMART | SM00438 | 5.4E-4 | 388 | 407 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.4E-4 | 388 | 405 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.43E-13 | 436 | 484 | No hit | No description |
SMART | SM00438 | 3.2E-5 | 446 | 465 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.9E-6 | 446 | 463 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 190 | 504 | 538 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 19 | 504 | 515 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.53E-9 | 532 | 584 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 542 | 561 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.0E-4 | 542 | 559 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.30E-5 | 589 | 637 | No hit | No description |
SMART | SM00438 | 0.34 | 599 | 617 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.022 | 652 | 682 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6E-4 | 652 | 667 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.59E-5 | 680 | 729 | No hit | No description |
Pfam | PF01422 | 4.5 | 684 | 710 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.021 | 691 | 712 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 2.4E-4 | 931 | 976 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1122 aa Download sequence Send to blast |
MSFSSAQNNR RNNNSNRPRN TPVQSARREW VPRGSTATTT VSAAPVTTTV ITTVVSPVFN 60 LNGSSSAGNG REKDNVSVAP VNHRNQTYVG PNYDKGPAYA GRERGRDREN HNHQENRVER 120 AVNGRINQGE HKRLKDPNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF 180 HLNCIKKWAR APTSVDTSAE KNQGFNWRCP GCQSVQLTSS KEIRYICFCG KRQDPPSDLY 240 LTPHSCGEPC GKKLEKELPG HDLSEEDLCP HVCVLQCHPG PCPPCKAFAP ARSCPCGKEV 300 ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CQVIVNAYCF CKKKTEVVLC 360 GDMGVKGDIE IEDGVFSCNS ACGRKLSCGN HVCLELCHPG PCGDCALLPS KVKTCCCGKT 420 SLEDERHSCL DPIPTCSKVC GKSLRCGVHR CQAVCHSGDC APCLVPVTQR CRCGSTSRTV 480 ECYKTQAEDE KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSVTGGWNPH FCSMPCEKKL 540 RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPSPSCQ LPCSVPQPCG 600 HPPTHSCHFG DCLPCAVPVA KECVGGHVIL RNIPCGSKDI RCNKLCGKTR QCGLHACART 660 CHSSPCDFSA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSPCPDVRC EFPVTITCSC 720 GRVSANVPCD AGGQIVDSVF EATIIHKLPS PLQPIEINGK KVPLGQRKLT CDDECAKMEK 780 KKVLSDAFGI TPPNLEALHF GDAAVSEVLG DLLRRDPKWV LSIEERCKCL VLGRSRGGVN 840 ALKVHVFCPM LKEKRDAVRL IAARWKLSVN AAGWEPKRFI TVHVTPKSKT PARILGAKGC 900 TVNNIAQPAV FDSLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL NDKNALAVFS 960 DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAVASATNAW GVSGAAKDGG GAAALKGNPW 1020 KKAVVQEPHL RESPWDPEEW SKNPTDSAPS AWRTNEATPA ASSNRWSVLA PEMTSNFPRA 1080 SITIKEPVTE PGVGGSALPP KPQDVGVDEM ADVVDDWEKA YD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622484.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1S3YGC0 | 0.0 | A0A1S3YGC0_TOBAC; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1U7VYN9 | 0.0 | A0A1U7VYN9_NICSY; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_009622484.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |