PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 285aa MW: 30256.1 Da PI: 9.2904 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.5e-08 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + C++Gd+C+FaH++ XP_009622408.1 97 KSKLCNKYNTAEGCNFGDKCHFAHSE 122 678*********************95 PP | |||||||
2 | zf-CCCH | 32.1 | 1.9e-10 | 256 | 280 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C++f++ G C +G++C+FaHg XP_009622408.1 256 FKTKMCSNFSK-GSCTFGEKCHFAHG 280 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.31 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.88 | 42 | 59 | No hit | No description |
PROSITE profile | PS50103 | 12.99 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 95 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-11 | 95 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0083 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.13E-15 | 156 | 235 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 9.8E-17 | 163 | 234 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.6E-12 | 163 | 233 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.068 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.8E-11 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.31E-14 | 166 | 228 | No hit | No description |
PROSITE profile | PS50103 | 16.22 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 255 | 281 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-8 | 256 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-7 | 256 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-14 | 256 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEFGRKRIVD GAFAGNGGMK KSRNESESFT SGVGSKSKPC MKFYSTSGCS YGEGCHFLHY 60 VPGYSAMSQI SNMGLNPAVP VGRNRASFSD GPASTMKSKL CNKYNTAEGC NFGDKCHFAH 120 SEMEIGKPVA LAYDDFQAAG PPSRFPGYHK PSQPSPVATN FGASATTTIS IDAALAGTII 180 GKNGVNSKQI CRLTGVKLSI KDHETDSNRR NIELQGTFDQ INQASAMVRE IISNVGTPTG 240 GPKNTGPFTR GPAGPFKTKM CSNFSKGSCT FGEKCHFAHG ASELQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622408.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 3e-94 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S4DP05 | 0.0 | A0A1S4DP05_TOBAC; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_009622408.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 8e-61 | C3H family protein |