PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 141aa MW: 16217.2 Da PI: 10.3428 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136.8 | 2.6e-42 | 3 | 121 | 47 | 170 |
YABBY 47 svnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrik 141 svn+a a + +++s ++ ++l+v + + ++ + s+++ ++ +++ + ++++ + v+rPPekrqrvPsayn+fikeeiqrik XP_009622269.1 3 SVNMAAAFHSSSSSSSSWQD-----IHHLQVPNYTAPEYRMDFGSSTKCNNRMTMRTPITNNTHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIK 92 55555555555555432222.....22333444444444444445555445555555556666655679************************** PP YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170 a+nPdishreafs+aaknWahfP+ihfgl XP_009622269.1 93 ANNPDISHREAFSTAAKNWAHFPHIHFGL 121 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-43 | 1 | 121 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 64 | 114 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.2E-5 | 69 | 115 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MWSVNMAAAF HSSSSSSSSW QDIHHLQVPN YTAPEYRMDF GSSTKCNNRM TMRTPITNNT 60 HEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 120 LMLESNNQAK LSCGSRKLSK S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 1e-150 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 1e-150 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622268.1 | 1e-103 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 4e-54 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3Y3Q8 | 1e-100 | A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like | ||||
STRING | XP_009622268.1 | 1e-102 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-55 | YABBY family protein |
Publications ? help Back to Top | |||
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