PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622269.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 141aa    MW: 16217.2 Da    PI: 10.3428
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY136.82.6e-42312147170
           YABBY  47 svnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrik 141
                     svn+a a +  +++s   ++      ++l+v + +  ++ +   s+++ ++ +++ +  ++++ +   v+rPPekrqrvPsayn+fikeeiqrik
  XP_009622269.1   3 SVNMAAAFHSSSSSSSSWQD-----IHHLQVPNYTAPEYRMDFGSSTKCNNRMTMRTPITNNTHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIK 92 
                     55555555555555432222.....22333444444444444445555445555555556666655679************************** PP

           YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170
                     a+nPdishreafs+aaknWahfP+ihfgl
  XP_009622269.1  93 ANNPDISHREAFSTAAKNWAHFPHIHFGL 121
                     ***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-431121IPR006780YABBY protein
SuperFamilySSF470952.36E-864114IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.2E-569115IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MWSVNMAAAF HSSSSSSSSW QDIHHLQVPN YTAPEYRMDF GSSTKCNNRM TMRTPITNNT  60
HEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG  120
LMLESNNQAK LSCGSRKLSK S
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677441e-150KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBankKJ6677451e-150KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622268.11e-103PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW464e-54YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A1S3Y3Q81e-100A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like
STRINGXP_009622268.11e-102(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-55YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]