PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622228.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family EIL
Protein Properties Length: 513aa    MW: 59132.1 Da    PI: 4.4431
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3389.44.9e-119323952345
                     XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                     +lk+rmwkd+m++++lk +k+ ++ + +++     +   s+  +eq+rrkkmsr+QD++LkYM+k+me+c+ qGfvYgi+pekgkpv+g+sdsLr
  XP_009622228.1  32 DLKRRMWKDRMRMQKLKTKKEINTSTCSKDllegDEDDDSQAKEEQSRRKKMSRSQDSVLKYMVKIMEICKGQGFVYGIVPEKGKPVTGSSDSLR 126
                     9*******************998877777766644445566899*************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT-- CS
            EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgls 187
                     +WWkekv+f++n+paai+     +l+      +  +++s  h l++lqDTtlgSLLsalmqhc ppqrrfpl++g++pPWWPtGkelwwg +g++
  XP_009622228.1 127 EWWKEKVRFEQNAPAAIAAFL-PKLVEV----NILDPNSCMHLLQDLQDTTLGSLLSALMQHCIPPQRRFPLDRGLPPPWWPTGKELWWGDQGFA 216
                     ******************983.345533....234689999****************************************************** PP

                     TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.XXXXXXXXXXXXXXXX CS
            EIN3 188 kdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.slrkqspkvtlsceqk 281
                     ++ g+ppykkphdlkkawkvsvL+a ikhms +++++r+l+ qsk+lq+km+ake++++++v+nqee +++      + s++k++++   ++e++
  XP_009622228.1 217 QKFGPPPYKKPHDLKKAWKVSVLAAIIKHMSTNLDKMRRLVKQSKSLQNKMTAKETATWSKVVNQEEVLLKLTEKALKiSTSKEEEEEEEEEEEE 311
                     ******************************************************************98775444444433333333333333333 PP

                     XXXXXXXXXX.XXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXX.......XXXXXXX.XXXXXXXX CS
            EIN3 282 edvegkkeskikhvqavktta.....................gfpvvrkrkkkpsesakvsske.vsrtcqssqfrgsetelifad 345
                     e+ e+++e++ ++ ++++  +                     g ++ rk k+k + ++ +  ++    t +s+++++s+  +   d
  XP_009622228.1 312 EEEEEEEEEEEEEEEEEN--KgkedeylalvpkignhvnlfdGSTLMRKEKRKGVFESHIDMEDeLYATQNSNNCTQSDLGNSRID 395
                     333322222222222222..134689****************66666666666665555555540445556677888877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.8E-11531283No hitNo description
Gene3DG3DSA:1.10.3180.103.5E-65160287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.48E-57162285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVEFQEIIEP LSPMSEVEEN QELDDEEINY NDLKRRMWKD RMRMQKLKTK KEINTSTCSK  60
DLLEGDEDDD SQAKEEQSRR KKMSRSQDSV LKYMVKIMEI CKGQGFVYGI VPEKGKPVTG  120
SSDSLREWWK EKVRFEQNAP AAIAAFLPKL VEVNILDPNS CMHLLQDLQD TTLGSLLSAL  180
MQHCIPPQRR FPLDRGLPPP WWPTGKELWW GDQGFAQKFG PPPYKKPHDL KKAWKVSVLA  240
AIIKHMSTNL DKMRRLVKQS KSLQNKMTAK ETATWSKVVN QEEVLLKLTE KALKISTSKE  300
EEEEEEEEEE EEEEEEEEEE EEEEEEEENK GKEDEYLALV PKIGNHVNLF DGSTLMRKEK  360
RKGVFESHID MEDELYATQN SNNCTQSDLG NSRIDSEKGE DQLLNMSINN FPSLIEAQPI  420
PNEEIMVGHG QHDWVNMEIK RSFDSYNASQ NANGGSVVEN FQGFWGGNVL EQLHYDPSTY  480
GNMNLNATPQ EDVVLHHQAP ISVWDLAYED TSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-581602871128Protein ETHYLENE INSENSITIVE 3
4zds_B5e-581602871128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622228.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-123EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A1U7Y0I70.0A0A1U7Y0I7_NICSY; putative ETHYLENE INSENSITIVE 3-like 4 protein
STRINGXP_009622228.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-121EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]