PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622138.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 309aa    MW: 35504.4 Da    PI: 10.33
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-1111791687
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87
                    +++p +fa+  g+++   k++tl + +g++W+v++  +  + r+++++GW  F  +n++   g+++ Fkl++ 
  XP_009622138.1 11 VTIPMTFARWTGIIN--MKKITLINGEGKKWKVNI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQG 79
                    69******9999884..558***************..999999****************989*******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.644195IPR003340B3 DNA binding domain
CDDcd100171.44E-61082No hitNo description
Gene3DG3DSA:2.40.330.101.6E-101078IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-101078IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-81179IPR003340B3 DNA binding domain
PfamPF030048.5E-891182IPR004252Probable transposase, Ptta/En/Spm, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAVRKTHSLF VTIPMTFARW TGIINMKKIT LINGEGKKWK VNIEHIGPRV LIKGGWAAFR  60
TQNKIAANGE TCRFKLIQGY GRGRGRPCYV LQEKKYGRKM THDKFFMETH IRKKKTPTDP  120
SRWIEDRGET IYGRYKINVE EYTQSLPPNE QGERPSVSDE EAQKIWLDVV GGLKKGIAYG  180
LPERSFRYYR AGLQGIRTFA QGEIIYRLTL SSMEKKIAKL TAEVEQTKAR EQKRDEQFDT  240
LQVQLEKRDQ QFNLLQGQLT NLLASGAFPI LRSRGPSPNA NTSRRDSSNH VNEEASSSED  300
EHDTIQNTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473169.11e-149PREDICTED: uncharacterized protein LOC107795098
TrEMBLA0A1S4A9B51e-148A0A1S4A9B5_TOBAC; uncharacterized protein LOC107795098
STRINGXP_009622138.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-09B3 family protein