PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 334aa MW: 36654.7 Da PI: 6.8339 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 6e-08 | 93 | 117 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y ++C+FaHg XP_009621747.1 93 FKTKLCCKFRA-GVCPYINNCNFAHG 117 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.2 | 4.4e-06 | 171 | 194 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ f+ C+yGd+C+F H+ XP_009621747.1 171 GRHCKKFYTEEGCPYGDTCSFLHD 194 5669*****9*************7 PP | |||||||
3 | zf-CCCH | 43 | 7.3e-14 | 228 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_009621747.1 228 WKTRICNKWETTGYCPFGSKCHFAHG 253 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 90 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 90 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0089 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-5 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 166 | 196 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-7 | 167 | 196 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.47 | 168 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 168 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-17 | 224 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-10 | 224 | 258 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-8 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-11 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDFMGEASFA GGNMMPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRAWSNG PSSETPSSSN 60 RSGSEPPQKK SRSSQGADSH VTNRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE 120 LRKPPPNWQE IVAEHESERG GGVMLESREE HQIPTVSSPE LRIETQRSFK GRHCKKFYTE 180 EGCPYGDTCS FLHDEQSRAR ESVAISVTPT VGGFGDNAAG ANLKPSNWKT RICNKWETTG 240 YCPFGSKCHF AHGAAELHKF GGGLMEMEGK DPLSTPPDLR QGGGSLKTTE SMVPSTISAP 300 GVQVQRPSDH RVIQKWKGPD KISKIYGDWI DDIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621747.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-119 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A1S4B5G4 | 0.0 | A0A1S4B5G4_TOBAC; zinc finger CCCH domain-containing protein 12-like | ||||
STRING | XP_009621747.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-116 | C3H family protein |