PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009621692.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 339aa MW: 38123.3 Da PI: 7.1777

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009621692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105	4e-33	165	223	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt+a+C vkk+vers +d+++v++tYeg+H+h+ XP_009621692.1 165 LDDGYRWRKYGQKAVKNNPFPRSYYRCTTASCGVKKRVERSIKDTSIVVTTYEGTHTHP 223 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.9E-34	150	225	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-29	157	225	IPR003657	WRKY domain
PROSITE profile	PS50811	31.227	160	225	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	165	224	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	166	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEKENKLKAE TSLENQTFSN QIPTSFSLPN IFDMLYETEK DSLDTIFGAH LLDYYNTTTT 60 PSIFDLLQTP LQTPLLIPPQ SLFTSISTTS TFQESSPVTP NSLSISSSSL EAADDDQQSN 120 TVKQKNEEQD QDKYKKQLKP KKKNVQKRQR EPRFAFMTKS EIDHLDDGYR WRKYGQKAVK 180 NNPFPRSYYR CTTASCGVKK RVERSIKDTS IVVTTYEGTH THPCPMTLRG STGVLPRTTA 240 YYGGAIGGGN GGGGTCSNSS LSIPQLQYYQ EQEQQTVLHF PTTTSHLNNF TVGYTSLFST 300 NSLEERRFSP SPYSSSLTGD DGLLHDMVSS QIRRDTKEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	155	226	7	78	Probable WRKY transcription factor 4
2lex_A	2e-28	155	226	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621692.1	0.0	PREDICTED: probable WRKY transcription factor 48
Refseq	XP_016515350.1	0.0	PREDICTED: probable WRKY transcription factor 48
TrEMBL	A0A1S4DPK9	0.0	A0A1S4DPK9_TOBAC; probable WRKY transcription factor 48
STRING	XP_009621692.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-44	WRKY DNA-binding protein 48