PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621512.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 216aa    MW: 23645.2 Da    PI: 5.3405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-153584255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r  r +lg+f t  +Aa a++a ++kl+g
  XP_009621512.1 35 TYKGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFETSHDAAVAYDAVARKLYG 84
                    69****999.**********8...2.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-203494No hitNo description
PROSITE profilePS5103221.7863592IPR001471AP2/ERF domain
PfamPF008476.6E-103584IPR001471AP2/ERF domain
SMARTSM003801.5E-323598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-303593IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-213593IPR016177DNA-binding domain
PRINTSPR003674.4E-93647IPR001471AP2/ERF domain
PRINTSPR003674.4E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSHCPAEKKI MKISQAASRK GCMRGKGGPE NASCTYKGVR QRTWGKWVAE IREPNRGPRL  60
WLGTFETSHD AAVAYDAVAR KLYGDNAKLN FPHLNTKNQA PNSTGSSSST YCNGVPETVN  120
MVNESLFFSN DSRSSCYSAG QASFPLPDNK KVEDDNNDEG VGFGGMWEDL NVNLPEIDDS  180
SIWAEAKATT LFQAVNEPGM FAGNLGDGIE YPPWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266688.11e-139PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
RefseqXP_019266689.11e-139PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
RefseqXP_019266690.11e-139PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
SwissprotQ9LQZ27e-48DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A314KZM61e-137A0A314KZM6_NICAT; Dehydration-responsive element-binding protein 2d
STRINGXP_009621512.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]