PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009621364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 332aa MW: 36977.6 Da PI: 9.8832 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.5 | 2.2e-42 | 90 | 215 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 + kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai elt + + + +ess ++s ss+++++++ XP_009621364.1 90 PMKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEELTTAQIKIT--SPNESSAAKKSPSSINSECEDVVL 182 679*************************************************************44333..223344445555556666666655 PP TCP 97 skksqksaasalnlak.esrakarararertrekm 130 + +q++a lnl + esrakarararert +k XP_009621364.1 183 ARAKQEEAI--LNLVArESRAKARARARERTIKKI 215 555555554..666666**************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-36 | 91 | 214 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.535 | 92 | 150 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.869 | 197 | 214 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MFPSGNSSGN PILRCSIPSF CSSNSSFLGI NGNQILLHQH QDQLSTHYLA ANNGHLIDNN 60 SSVMFANNVI HNKSNNQEIC YPLNTMMKKP MKKDRHSKIL TSQGHRDRRV RLSIGVARKF 120 FDLQDMLGFD KPSKTLDWLF TKSKLAIEEL TTAQIKITSP NESSAAKKSP SSINSECEDV 180 VLARAKQEEA ILNLVARESR AKARARARER TIKKIWAQIE AKLNSSSVVK EQTKIDEIKE 240 MIHGSVLVER KNIKSSSSTL GFHHPNLSGT EEAAANSNYN SSSSSTRNWD HDVNRTIMNS 300 SLTAVMATIS TSSQVVQGSD QKEWDSYHCS QI |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF274250 | 1e-67 | JF274250.2 Petunia x hybrida TCP2 gene, complete cds. | |||
GenBank | JQ400105 | 1e-67 | JQ400105.1 Petunia x hybrida putative transcription factor (TCP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621364.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A1S3ZF91 | 0.0 | A0A1S3ZF91_TOBAC; transcription factor CYCLOIDEA-like | ||||
STRING | XP_009621364.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-30 | TCP family protein |