PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621364.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 332aa    MW: 36977.6 Da    PI: 9.8832
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.52.2e-42902152130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                     + kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai elt  + +    + +ess  ++s ss+++++++   
  XP_009621364.1  90 PMKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEELTTAQIKIT--SPNESSAAKKSPSSINSECEDVVL 182
                     679*************************************************************44333..223344445555556666666655 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekm 130
                      + +q++a   lnl + esrakarararert +k 
  XP_009621364.1 183 ARAKQEEAI--LNLVArESRAKARARARERTIKKI 215
                     555555554..666666**************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3691214IPR005333Transcription factor, TCP
PROSITE profilePS5136934.53592150IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.869197214IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MFPSGNSSGN PILRCSIPSF CSSNSSFLGI NGNQILLHQH QDQLSTHYLA ANNGHLIDNN  60
SSVMFANNVI HNKSNNQEIC YPLNTMMKKP MKKDRHSKIL TSQGHRDRRV RLSIGVARKF  120
FDLQDMLGFD KPSKTLDWLF TKSKLAIEEL TTAQIKITSP NESSAAKKSP SSINSECEDV  180
VLARAKQEEA ILNLVARESR AKARARARER TIKKIWAQIE AKLNSSSVVK EQTKIDEIKE  240
MIHGSVLVER KNIKSSSSTL GFHHPNLSGT EEAAANSNYN SSSSSTRNWD HDVNRTIMNS  300
SLTAVMATIS TSSQVVQGSD QKEWDSYHCS QI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2742501e-67JF274250.2 Petunia x hybrida TCP2 gene, complete cds.
GenBankJQ4001051e-67JQ400105.1 Petunia x hybrida putative transcription factor (TCP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621364.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A1S3ZF910.0A0A1S3ZF91_TOBAC; transcription factor CYCLOIDEA-like
STRINGXP_009621364.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-30TCP family protein