PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621305.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 383aa    MW: 43128.5 Da    PI: 4.3446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-194897255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  XP_009621305.1 48 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 97
                    79*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-3147104No hitNo description
SuperFamilySSF541711.44E-1948105IPR016177DNA-binding domain
PROSITE profilePS5103219.98148105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2848104IPR001471AP2/ERF domain
PfamPF008473.0E-144897IPR001471AP2/ERF domain
SMARTSM003802.3E-3548111IPR001471AP2/ERF domain
PRINTSPR003671.7E-84960IPR001471AP2/ERF domain
PRINTSPR003671.7E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVRKRKAEGL AKTHESHDDQ GNTAAWNEMV KEADGAATQS GAQRARKRYV GVRQRPSGRW  60
VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGANT RTNFWPCSLS NSSSSSTSAL  120
PPKITNILLT RLKERNNSLA AAGDDDSSKS CSVPEIGRQQ QNQQEKFGEN VADFSDSLYT  180
EYLNYPDDHI TDNNTIANVT SWGDFIQPVN NFQSSNEEII EVGDEEEEIG EAINTDVLED  240
MESIDFNFLD EIGSCYYSPF EIAEELSTET MEHGMVYGEE TSAVSEAMRR MNYERKFSAS  300
LYAFNGITEC LKLKMKSARA TQWETSEQLS TLRNAYKKNQ EEKEKNEKCN VEEAVPFSLT  360
ENAYESELSI WSSIDLPPIC FVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14481041471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-36HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621305.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016488545.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1S4BI380.0A0A1S4BI38_TOBAC; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009621305.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11