PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621249.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24962.6 Da    PI: 9.657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.9e-211763349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  XP_009621249.1 17 IEVKNYLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 63
                    7777788**********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.394767IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-30766IPR002100Transcription factor, MADS-box
CDDcd002653.29E-32881No hitNo description
SuperFamilySSF554551.27E-26889IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-17929IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAKKPSIGRQ KIKIAKIEVK NYLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
FSFGHPNVES IIDRFLSRNH NPISNSSLHL VEAHRNANVR ELNLQLTQIL AELEIEKKRG  120
ESLDQMRKTS QSQYWWEAPI SQLGLHELEQ LKEFMEVLKN NVTNQASKFM VEITANSSFY  180
FGVNDNGIFD NYDIKSAQIM VASNNLHNHN FGFDSAGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-14793187MEF2C
5f28_B3e-14793187MEF2C
5f28_C3e-14793187MEF2C
5f28_D3e-14793187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402041e-176AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9754401e-176HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-176HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464597.11e-154PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S3ZJT21e-153A0A1S3ZJT2_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009621249.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-60AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]