PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621203.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 298aa    MW: 33478.8 Da    PI: 10.271
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof99.81.7e-31118174561
          zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     alkcprC+stntkfCy+nnyslsqPryfCk+C+r+Wtk G lr vP Gg rr+++k 
  XP_009621203.1 118 ALKCPRCESTNTKFCYFNNYSLSQPRYFCKTCKRHWTKDGVLRSVPEGGRRRRRNKL 174
                     579**********************************************99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-25100166IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.779119173IPR003851Zinc finger, Dof-type
PfamPF027013.9E-29119172IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MIWMCFQKVA EEQMMKQLLI SKTTTKIRSG ITVKKSRWIA WIRFNSLNQQ HSSGSRDETK  60
GNDGSSSANL QFLSTQLEPA PPPLPPPPPP SQPYVGSTCP RSMPEQARLA NIRMPLVALK  120
CPRCESTNTK FCYFNNYSLS QPRYFCKTCK RHWTKDGVLR SVPEGGRRRR RNKLSNSNNN  180
NNNNNNTSKS PASSAKNDGL KATTNNSGSF NSNRFYGLVN PQIPPLRFMS PLGQLTDHFH  240
YHYTPSDNNS TLNYSAISSS APVVETSIDS IQLEMEAQQF PNLMGRLDPS MSSGIYPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173GRRRRRNKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621202.10.0PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBLA0A1S3Z7D81e-141A0A1S3Z7D8_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009621202.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-31Dof family protein