PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 42148.6 Da PI: 7.6568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W+ + + g+ R++ +c++rw +yl XP_009621190.1 14 KGPWTPEEDQKLLAYIEEHGCGSWSDLPPKAGLQRCGRSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.4e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+ +++++++lG++ W++Ia+ ++ +R+++ +k++w++ XP_009621190.1 67 RGKFSSEEERTILQLHALLGNR-WSAIASLLP-NRSDNVVKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.964 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.769 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-9 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGRLPCIDKK GFKKGPWTPE EDQKLLAYIE EHGCGSWSDL PPKAGLQRCG RSCRLRWINY 60 LRPNIKRGKF SSEEERTILQ LHALLGNRWS AIASLLPNRS DNVVKNYWNT RLKKRLIKMG 120 IDPMTHQPKR DTSQSNKSIA SLSHMAEWET ARLEAEARLV RNSNKARSRA SVVSHFGNKP 180 LSTHIFSAWS TLESYASRMV SNNCVAVNST TYNNNNNYQP RNFQLPCLDI LKAWQMSCTK 240 LPTLNDDINR ATFLDGFFNK NLKSPTPSEN LLNIEQTVEV GEQLSLPTIS CIEEFFLHED 300 KITQDNDILQ TDLTELFPEY DCSQTAENYP GELLESFWES CSGDFENNKS NCNNHFPYLV 360 TSPIGSPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621190.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A1S3ZZW5 | 0.0 | A0A1S3ZZW5_TOBAC; protein ODORANT1-like | ||||
STRING | XP_009621190.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 8e-87 | myb domain protein 16 |