PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009621067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 214aa MW: 24037.4 Da PI: 7.9015 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 201 | 4.8e-62 | 6 | 166 | 2 | 165 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCt+llsvnl+kas + hl ++ ++l+v++e+++ n+++ +s+ + XP_009621067.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTNLLSVNLMKASLVPL---HLFA-SLNQSEQKLEVDKEDIDANKKSVDSEISF 96 789999***********************97369*****************9984422...2222.33446788999999999999999999999 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 v+s+ +e++ e+v v++ v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ XP_009621067.1 97 VASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 166 99987.555555555577769************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-58 | 11 | 167 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 114 | 168 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.3E-5 | 117 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTNL LSVNLMKASL 60 VPLHLFASLN QSEQKLEVDK EDIDANKKSV DSEISFVASS DEEDQIENVV PVYQVVNKPP 120 EKRQRAPSAY NCFIKEEIKR LKTIYPNMTH KQAFSTAAKN WAHFPPSQHR GDRESCSLGD 180 RKMPKISAAR NSQVPRDCNG FLERKASNMT PSNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621067.1 | 1e-160 | PREDICTED: axial regulator YABBY 4 isoform X2 | ||||
Refseq | XP_016511954.1 | 1e-160 | PREDICTED: axial regulator YABBY 4-like isoform X2 | ||||
Swissprot | Q9LDT3 | 4e-65 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1S4DFF6 | 1e-159 | A0A1S4DFF6_TOBAC; axial regulator YABBY 4-like isoform X2 | ||||
STRING | XP_009621066.1 | 1e-158 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-67 | YABBY family protein |
Publications ? help Back to Top | |||
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