PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621066.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 215aa    MW: 24165.6 Da    PI: 7.9015
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.48.7e-6361672165
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     ++f+  + +CyvqC++C+til+vsvP +sl  k+vtvrCGhCt+llsvnl+kas +     hl  sl+++ +++l+v++e+++ n+++ +s+ + 
  XP_009621066.1   6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTNLLSVNLMKASLV---PLHLFASLNQSEQQKLEVDKEDIDANKKSVDSEISF 97 
                     789999***********************97369****************998854...446677888889999999*********999999999 PP

           YABBY  96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                     v+s+  +e++ e+v  v++ v++PPekrqr+Psayn+fikeei+r+k+  P+++h++afs+aaknWahfP+
  XP_009621066.1  98 VASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 167
                     99988.555555555577769************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.5E-5911168IPR006780YABBY protein
SuperFamilySSF470952.49E-8115169IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.4E-5118169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTNL LSVNLMKASL  60
VPLHLFASLN QSEQQKLEVD KEDIDANKKS VDSEISFVAS SDEEDQIENV VPVYQVVNKP  120
PEKRQRAPSA YNCFIKEEIK RLKTIYPNMT HKQAFSTAAK NWAHFPPSQH RGDRESCSLG  180
DRKMPKISAA RNSQVPRDCN GFLERKASNM TPSNE
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621066.11e-161PREDICTED: axial regulator YABBY 4 isoform X1
RefseqXP_016511953.11e-161PREDICTED: axial regulator YABBY 4-like isoform X1
SwissprotQ9LDT36e-66YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A1S4DF361e-160A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1
STRINGXP_009621066.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-68YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]