PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009621047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 199aa MW: 22861.5 Da PI: 7.0204 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.9 | 2.2e-15 | 117 | 196 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+ GF ++k+ s+k+ + + + ++ C ++ k++++ +++r +C+a+++ +e++g w+v+k++++HnH+l p XP_009621047.1 117 DFYKEYARLSGFCIVKKISNKK-GGDIVRQVQYGCDRSTKSRNKY----------VTKRRNCRARINGILEENGSWRVSKVVKKHNHQLEP 196 6****************99997.6666999*****9988776654..........56999****************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-12 | 117 | 196 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MYGHIRRNRI RYEDIRGKVG VTSAEDKMRL SEIEMVPTCA EEIRECTNGN FNDGEDHSDD 60 AAAAAAADDN DDDDDHYLKE EGEGGDDRKM SNEFNEKDLV IGPITRMRFN NKDVMFDFYK 120 EYARLSGFCI VKKISNKKGG DIVRQVQYGC DRSTKSRNKY VTKRRNCRAR INGILEENGS 180 WRVSKVVKKH NHQLEPALS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621047.1 | 1e-146 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3XDX7 | 1e-127 | A0A1S3XDX7_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_009621047.1 | 1e-146 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 7e-09 | FAR1 family protein |