PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621030.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 356aa    MW: 39160.9 Da    PI: 8.7557
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.73.8e-3567123459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  XP_009621030.1  67 VIYKECLKNHAASLGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPEE 123
                     89******************************9********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2967121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3169120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24369120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2369119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.27E-17206273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28206273IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25212269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDLTNNSTTT TTTLANTTTI TTTSAHIKIP EAEIETPTQI QKPKPFSFSN GVLKRKNLFQ  60
HHHPIVVIYK ECLKNHAASL GGHAVDGCGE FMPSPTANPA DPTSLKCAAC GCHRNFHRRE  120
PEEPIVIPPP PIATAALEYQ PHHRHHPPPP PPPLPRGDHS SPNSPSPPPI SSAYYPASAP  180
HMLLALSAGF SGEKNHNPIS SPVVNTTNCN GRKRFRTKFT PDQKVKMLEF AERVGWKMQK  240
RDEDLVRSFC NQIGIEKGVL KVWMHNNKNT FGKKLDQHHL ADININNNGN STNVVNGFCI  300
VSRNNNSHHH NSTDSAEFHH LHHHESSYDD NKISDHIKSV GTANVVVATN GSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-212132701875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621030.10.0PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016500216.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF04e-70ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A1S4CGH00.0A0A1S4CGH0_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009621030.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-64homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]