PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620850.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 327aa MW: 36471.5 Da PI: 7.8675

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.8	3.4e-29	52	149	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++ ++ +++++ a+n +++ XP_009620850.1 52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 146 78*************************************************************77777555322222222221111122333333 PP TCP 89 ..k 89 XP_009620850.1 147 vyG 149 321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.247	53	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-26	53	147	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MNSSGNNFQA KQESGGTNNS KLLTSKATTS TSSRQWGGFK NPRIVRVSRT FGGKDRHSKV 60 CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IEATKHEIDK LPPLQIPPGY 120 FAQFQGDHHF DAANLRAKSK VIDTDTVYGK NKSIASNEQE NQEEIGGYVP QISAQSFFPL 180 VNKSPNLPGL INSSMPFNSY YPWEPNSNLS LAHFGQPQIE ESSQNNFPLS LASSLSLPSG 240 SQLYFNPTAT TFSPMISPYM TNYPIESDPR AQLNHFHFLS SSSQHVLPNP SVPTLNLIKP 300 FSLNDNPRWI HSREDEDDSQ PHEGGDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-19	58	112	1	55	Putative transcription factor PCF6
5zkt_B	5e-19	58	112	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620849.1	0.0	PREDICTED: transcription factor TCP5
Refseq	XP_009620850.1	0.0	PREDICTED: transcription factor TCP5
TrEMBL	A0A1S3YDZ2	0.0	A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBL	A0A1U7WT27	0.0	A0A1U7WT27_NICSY; transcription factor TCP5-like
STRING	XP_009620849.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-47	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5