PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 462aa MW: 50164.9 Da PI: 8.0301 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 168 | 245 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akey+r+h+vCe hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_009620618.1 168 RCQVEGCNLDLSSAKEYYRKHRVCENHSKCPKVIIAGVLRRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 245 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-33 | 162 | 230 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.257 | 166 | 243 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.28E-38 | 167 | 248 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 169 | 242 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MEWNAKWDWG NLVMFGSEVA KSPKELQLTD WGVEEDGELD AGSFNLSSGG SGSGTGGYVS 60 DVGCGSSIKS SISASTDSSP KEGLKASDFS FDGSPEDLSK KVKPCSRNSP PMEAPVGSVE 120 PLVGLKLGKR TFETIGGAKV SSFPDKHVSS AAAAKKTKSS TQNAPTPRCQ VEGCNLDLSS 180 AKEYYRKHRV CENHSKCPKV IIAGVLRRFC QQCSRFHSLS EFDEKKRSCR RRLSDHNARR 240 RKPQQETIQF NSARLSSLFY DSRQPMNLVL NHSNLVQCRA AANSTWESTE ETKFSITRGL 300 APKPERDGST NGQSLLPGIQ FSRAVGAHGN VSSCLLLPSK GHTAEVFNRG AKESMFNMGT 360 GPEFPRALSL LSTNSWGSSE PETVSLNHPT HANQSSMPEQ MMQAIPQGVP LLSCEYWQGD 420 GQPSSDPRDH TLAANSHAGG SFQGIELFKP PFDTDFYLNA LN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-26 | 169 | 242 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 241 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC072721 | 0.0 | LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620618.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_009620619.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_009620620.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016506660.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016506661.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016506662.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016506663.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A1S4CZU6 | 0.0 | A0A1S4CZU6_TOBAC; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_009620616.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 7e-57 | squamosa promoter binding protein-like 2 |