PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620426.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 456aa    MW: 49812.9 Da    PI: 6.6334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12393438655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  XP_009620426.1 393 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 438
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15390449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-11391442No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14392448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8393438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12393443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITSGGCGYA RDDFSQLQNS  60
RGSNSTDIEQ VFAKFVASIG NQGSNSGSFS SNQQIQENPA SNMNVRSDFI VPKQEVKQQH  120
ERLTRHRSSD YSLVSQMNYQ TQAQQQSQSQ FISSVKQEPE MNYQNLAQQQ IDNSKAATSL  180
AAVGNSFTFT TSVNSTRVSP VNIGGGVGAG GGNTNLTRYN SSPAGFFDLI NIENEYGAMR  240
GVGSYGTGAN ATAETSLSTP KRFKTQVGIS SGKPPAFPGL MTPISEIGDK VVEENSSGDE  300
HKNDESSITD FPIPSWEDSH ILSDDFLKAE DIEIEPFSNV NASDNQNCEG LSRPPIPLSH  360
HLSLPTSTLE KLLQDSTPLN VRAKRGCATH PRSIAERVRR TKISDRMRRL QELVPNMDKQ  420
TNTADMLDFA VDYIKELEKQ VKILAEKRAK CTCTNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754502e-45HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620426.10.0PREDICTED: uncharacterized protein LOC104112259 isoform X1
TrEMBLA0A1S3Y7H60.0A0A1S3Y7H6_TOBAC; uncharacterized protein LOC107773192 isoform X1
STRINGXP_009620426.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-43bHLH family protein