PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009620362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 27324 Da PI: 9.0261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 70 | 91 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f r G C+yGd C++aH XP_009620362.1 70 PPCLQFKRWGSCSYGDECRYAH 91 89******************** PP | |||||||
2 | zf-CCCH | 38.5 | 1.9e-12 | 153 | 178 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++ rtGtC yG++C+FaHg+ XP_009620362.1 153 KTRFCINWERTGTCAYGSKCQFAHGK 178 7788********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.76 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-6 | 70 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-6 | 71 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-9 | 150 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.211 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-14 | 151 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-10 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MPANNFGISY KHEDEENYSN HWPRFITSGQ KCGINSNAEY QAFKRPKMMN SKMGLEDNRS 60 NVAMTVGPQP PCLQFKRWGS CSYGDECRYA HITGPLKGIR VEDQRNLSKV KSCHFFGSGF 120 CRISSAISIA TIGREVRNNT SSDAVDLRIK LLKTRFCINW ERTGTCAYGS KCQFAHGKAE 180 LQTLGSSNTL ESLGSAGICA PAKNAASECR FLFKWTNVQK ISQIYADWIE RVQLVPLSSH 240 TVEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620362.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3 | ||||
Refseq | XP_016459040.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3 | ||||
TrEMBL | A0A1S3Z3M8 | 0.0 | A0A1S3Z3M8_TOBAC; zinc finger CCCH domain-containing protein 39-like isoform X3 | ||||
STRING | XP_009620360.1 | 1e-179 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-15 | C3H family protein |