PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620360.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 268aa    MW: 30034 Da    PI: 8.943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-087091425
                    ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                    ++C  f r G C+yGd C++aH
  XP_009620360.1 70 PPCLQFKRWGSCSYGDECRYAH 91
                    89******************** PP
2zf-CCCH19.41.9e-06109132225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k + C+ff  + +C+yG++C+F H
  XP_009620360.1 109 KVKSCHFFGSGKECPYGNKCHFLH 132
                     667799888888************ PP
3zf-CCCH38.32.2e-12177202227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C ++ rtGtC yG++C+FaHg+
  XP_009620360.1 177 KTRFCINWERTGTCAYGSKCQFAHGK 202
                     7788********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.766794IPR000571Zinc finger, CCCH-type
SMARTSM003560.00336793IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-67091IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-67191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-7106135IPR000571Zinc finger, CCCH-type
SMARTSM003560.023107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934107135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6107136IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4109132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-9174206IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6175202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211175203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-14175206IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10177202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPANNFGISY KHEDEENYSN HWPRFITSGQ KCGINSNAEY QAFKRPKMMN SKMGLEDNRS  60
NVAMTVGPQP PCLQFKRWGS CSYGDECRYA HITGPLKGIR VEDQRNLSKV KSCHFFGSGK  120
ECPYGNKCHF LHERNQKPEG GVGFCRISSA ISIATIGREV RNNTSSDAVD LRIKLLKTRF  180
CINWERTGTC AYGSKCQFAH GKAELQTLGS SNTLESLGSA GICAPAKNAA SECRFLFKWT  240
NVQKISQIYA DWIERVQLVP LSSHTVEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620360.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_016459038.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBLA0A1S3Z3U50.0A0A1S3Z3U5_TOBAC; zinc finger CCCH domain-containing protein 39-like isoform X1
STRINGXP_009620360.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-23C3H family protein