PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620219.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 234aa    MW: 26819.9 Da    PI: 10.1138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-18133216495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++ps+v+   +l lp +f++++   ++++ t+tl de+g++W   +  +k++    l++GWk+F+ +++L +gD +vF+l++ ++f  +  
  XP_009620219.1 133 SMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPTKF--KAY 216
                     689*****************9995..346679***************555555....9***********************997777..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-24123221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-20124220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-26128219No hitNo description
PROSITE profilePS5086313.493130221IPR003340B3 DNA binding domain
SMARTSM010195.4E-24130221IPR003340B3 DNA binding domain
PfamPF023621.1E-16133217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVMSKVKYEE LRQQRLEENK KRMEELNLPL LTQALKISSS PKPSPMKKVK PRIIRTELVS  60
VRRSPRVANK PAPEFKEVIY YERVMIPRRM STPRKRDSSN MVYATDEERA ASIEKAEKLE  120
ASLGPDYPIL VRSMLPSHVS GGFWLGLPSN FCRKNLPRRD DTITLIDETG EEWPTVYLAQ  180
KNGLSGGWKK FAVDHDLADG DAIVFHLIRP TKFKAYIIRV NNVSESESTE TSTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-62HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620219.11e-172PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_016488337.11e-172PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-69Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A1S4BHL91e-171A0A1S4BHL9_TOBAC; B3 domain-containing protein At5g42700-like
STRINGXP_009620219.11e-172(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-64B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]