PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620041.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 364aa    MW: 41369.6 Da    PI: 7.4809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C +Gd C FaHg
  XP_009620041.1 141 ACPDFRK-GNCLRGDGCEFAHG 161
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4136162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5140163IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559171195IPR000571Zinc finger, CCCH-type
SMARTSM0035612171194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVKTPLFHNF IYKLNITAYT SKATFPTMIG GKNHHLNPTV DIPPWPYTDD QTSNMYFMLS  60
PSENSNVTPN FAEDYSQFEL ENGEIELPVD MYACDNFRMF EFKVRKCARG RSHDWTECPY  120
LHHGEKARRR DPRKYHYSGT ACPDFRKGNC LRGDGCEFAH GVFECWLHPA RYRTQPCKDG  180
VNCKRRVCFF AHSADQLRVL SPNADSSFEH QSPRLGGRAL QFVSSPESSS PPTESPPMSP  240
MLSRSLGSNS VNDVMASLRQ LQLNRLNSMP TAWNVQLGSP GRPVTRPGFC SLPVTPTGNL  300
TRPGNRCFDL WEEEPAFERV ESGRDLRVKM FERLSKENPL DMVHPNLNAD APNPDVGWVS  360
DLIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620041.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
RefseqXP_016474888.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-116C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S4AEK40.0A0A1S4AEK4_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009620041.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]