PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30739.2 Da PI: 5.1414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++ ++ G+g +W + +++ g++R++k+c++rw++yl XP_009620040.1 14 RGPWSPEEDNTLKNYLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.6 | 7e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ + q G++ W+ Ia+ ++ gRt++++k++w++ XP_009620040.1 69 GGFTEEEDNIILTLYGQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.523 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.58E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.567 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.85E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRAPCCDKS KVKRGPWSPE EDNTLKNYLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIL TLYGQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKLMAA 120 ENNNLSSCSY NSSDLNHNFS INSFSRNYSN MDSNTFTSLM DPNLINPNLV IPEMLVAESD 180 QLFSLQSLME IQENGTIQLA QDQEDGYIMD FSSGISSSYY YDLVNGFDFQ EKFIGADDPY 240 YFSSSSNYST LVQLQANNIP HIDQTFRGVE K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-38 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 1e-38 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620040.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4ADY4 | 0.0 | A0A1S4ADY4_TOBAC; transcription factor RAX2-like | ||||
STRING | XP_009620040.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-74 | MYB family protein |