PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619950.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 402aa MW: 42084.2 Da PI: 11.851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C k Fs++ L H+ +H XP_009619950.1 18 YRCDNCRKLFSSSQALAGHQHLH 40 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.77E-5	17	43	No hit	No description
PROSITE profile	PS50157	10.783	18	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAHEPHNHKI TGQGIVVYRC DNCRKLFSSS QALAGHQHLH KVQGTWVKGH HHKFLLPPDY 60 LPDLNRFIAR NNKSITVRIG GRGKPIVQEP LAVAPAPALA TPLLAQAPAS APIGPRHGRP 120 QSVIQPQPTV QVPLAAALAP ATPLLAQASP LPLAVAPAPA PAPAPAPAPA TPLLAQSLAL 180 PLAAASSAAT PLLAQAPAQA LPLAVAPALA APLLAQAPTL VARRRGKPRS IIRPQPMVQA 240 PLATAPAPAT PLLVQAPAPV ARPRGRPRSI IRPQPMMQAP LAAAPAPATP LLVQAPAPAP 300 VARPRGRPRS IIRSQPMVQV PLAASPTPAT PLLVQGPDPI ARLENQLALY QNRLNYFKVV 360 AARREESTHS STGSTSTITA DKTNGKKKVE EEVEELDLEL RL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAHEPHNHKI TGQGIVVYRC DNCRKLFSSS QALAGHQHLH KVQGTWVKGH HHKFLLPPDY  60
LPDLNRFIAR NNKSITVRIG GRGKPIVQEP LAVAPAPALA TPLLAQAPAS APIGPRHGRP  120
QSVIQPQPTV QVPLAAALAP ATPLLAQASP LPLAVAPAPA PAPAPAPAPA TPLLAQSLAL  180
PLAAASSAAT PLLAQAPAQA LPLAVAPALA APLLAQAPTL VARRRGKPRS IIRPQPMVQA  240
PLATAPAPAT PLLVQAPAPV ARPRGRPRSI IRPQPMMQAP LAAAPAPATP LLVQAPAPAP  300
VARPRGRPRS IIRSQPMVQV PLAASPTPAT PLLVQGPDPI ARLENQLALY QNRLNYFKVV  360
AARREESTHS STGSTSTITA DKTNGKKKVE EEVEELDLEL RL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440259.1	1e-149	PREDICTED: vegetative cell wall protein gp1-like
TrEMBL	A0A1S3XK96	1e-148	A0A1S3XK96_TOBAC; vegetative cell wall protein gp1-like
STRING	XP_009619950.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21