PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619240.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 647aa MW: 72164.3 Da PI: 5.1508

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	411	448	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + XP_009619240.1 411 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 448 664459******************************88 PP
2	BELL	126.2	1.2e-40	273	344	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+k +kLls+l+e+d+rY+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+dai++qi XP_009619240.1 273 EKQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAICDQI 344 689********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.8E-60	195	342	IPR006563	POX domain
Pfam	PF07526	1.4E-50	201	340	IPR006563	POX domain
PROSITE profile	PS50071	12.163	389	452	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	392	456	IPR001356	Homeobox domain
CDD	cd00086	3.45E-12	392	453	No hit	No description
SuperFamily	SSF46689	2.27E-17	393	459	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-29	395	458	IPR009057	Homeodomain-like
Pfam	PF05920	4.3E-18	409	448	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MATYFPSPNS QREAETFQYF RQSLPGSYSE ASNAPENMMV FMNYSSSGTY SDMLTGTSQQ 60 QNSCVDIPPV GDSDSNNTSQ QEILSNLGGS RMGIHDFSAW RDSRNEMLYL SLGSNISSGI 120 GISHVQSQNP NQGFTSFLNP ASSIPGEVSG GNVSFGDGDN SQPKQQRNSD YLPPDYAGSN 180 SDAMKGGYNS PYGTSSIGRK VPNSKYLKAA QYLLDEVVNV RKAIKEHNSK KEFTKESRES 240 DGDSKNKSSD PPANGSSNPQ DSKNHQSELS QTEKQEVQNK LTKLLSMLDE IDRRYRQYYH 300 QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS VGEQDASENS 360 KAIGISRLRY VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK 420 DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDTEMNSN SSSDFASRLA 480 SKDSKVEETE ELKRNETSEY EQYNSDQILE SKSNHVADVE MEGANNAETQ SQSGMENQTQ 540 RDEPRPAMDN CTLFQDTFVQ GNDRFSDFGR FGSGNVLPNG VSLTLGLQQG EGSSLPMSIE 600 SHGSYVPLRV DEIYSTAPTT MVSETAEFNC LDSGSRQHPF WLLPSAT

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MATYFPSPNS QREAETFQYF RQSLPGSYSE ASNAPENMMV FMNYSSSGTY SDMLTGTSQQ  60
QNSCVDIPPV GDSDSNNTSQ QEILSNLGGS RMGIHDFSAW RDSRNEMLYL SLGSNISSGI  120
GISHVQSQNP NQGFTSFLNP ASSIPGEVSG GNVSFGDGDN SQPKQQRNSD YLPPDYAGSN  180
SDAMKGGYNS PYGTSSIGRK VPNSKYLKAA QYLLDEVVNV RKAIKEHNSK KEFTKESRES  240
DGDSKNKSSD PPANGSSNPQ DSKNHQSELS QTEKQEVQNK LTKLLSMLDE IDRRYRQYYH  300
QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS VGEQDASENS  360
KAIGISRLRY VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK  420
DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDTEMNSN SSSDFASRLA  480
SKDSKVEETE ELKRNETSEY EQYNSDQILE SKSNHVADVE MEGANNAETQ SQSGMENQTQ  540
RDEPRPAMDN CTLFQDTFVQ GNDRFSDFGR FGSGNVLPNG VSLTLGLQQG EGSSLPMSIE  600
SHGSYVPLRV DEIYSTAPTT MVSETAEFNC LDSGSRQHPF WLLPSAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	398	456	5	63	Homeobox protein Meis2
3k2a_B	4e-16	398	456	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406703	0.0	AF406703.1 Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619240.1	0.0	PREDICTED: BEL1-like homeodomain protein 7 isoform X1
Swissprot	Q9SIW1	1e-124	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A1S4CU09	0.0	A0A1S4CU09_TOBAC; BEL1-like homeodomain protein 7
STRING	XP_009619240.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10205	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-126	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]