PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619172.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27857.7 Da    PI: 9.991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev vi+fsst klyeyss
  XP_009619172.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIVFSSTSKLYEYSS 59
                    8***********************************************96 PP
2K-box81.81.5e-2781171999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +++ + +q+e+a L++++enLq+++R+++Ge+L+ L++k+Lq+Le+qLe sl+ iR +K+++l+++++el +k +  ++e ++L kkl+
  XP_009619172.1  81 DPSSEVKFWQREAALLRQQLENLQENHRKMKGEELSGLNVKDLQNLEKQLEMSLRGIRMRKDQILIDEVQELNQKGNLSHQESMELYKKLD 171
                     567889*********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
CDDcd002653.16E-43277No hitNo description
SuperFamilySSF554554.71E-32289IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.19186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIMIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIVFSS TSKLYEYSST  60
SMKSVIERYN KAKEETHKLG DPSSEVKFWQ REAALLRQQL ENLQENHRKM KGEELSGLNV  120
KDLQNLEKQL EMSLRGIRMR KDQILIDEVQ ELNQKGNLSH QESMELYKKL DLVRQENTEL  180
YKKVYGTRDA NAVSRNAMNS NSLRVNEDPH APLHLQLSQP QQQHYETPGT TKLGLSLQQW  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21174174MEF2C
5f28_B2e-21174174MEF2C
5f28_C2e-21174174MEF2C
5f28_D2e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754434e-51HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755164e-51HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619172.11e-178PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_018631474.11e-178PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_018631475.11e-178PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-109MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3XNR61e-168A0A1S3XNR6_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009619172.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-88AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]