PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619094.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 747aa    MW: 82884.7 Da    PI: 4.4663
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.3e-13595636346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW+++E el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
   XP_009619094.1 595 RWSKQETELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 636
                      9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.1E-28586670No hitNo description
PROSITE profilePS5129311.203591639IPR017884SANT domain
SMARTSM007173.1E-10592640IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-11594643IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-8595636IPR009057Homeodomain-like
CDDcd001672.73E-8595636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MVLSVLKSLS TRPFKVVESV SMDLLDDILA DGASKTVKAG GKFQPRAKPR LVKKGPAVAS  60
STVSLTSKPT GDTVATDSFE ALKKDGKNSQ NYDKQSSVLA EPSLEHPLAA ETLGPSVGSY  120
LDTSMVVPDN SEDSKTCLEK SEGEYADIYI GLDSFDDLLP ISSAIENSSP ATDPSAVHVA  180
GADKGQEQLS IPVSSVDDSA PSTSNLQPDE VAACQDPLTC QGSVVPVSGS CQMEMDSYPS  240
LEADILGVTT TSGQSTRRFQ PKSKLQVYRE RYDTSIPDSD AVESVSCQPN SHSVHSEMDF  300
VDREKEHGFP ADDVLDFSAR GFDNNIITES THEFPVHDEY VIEASHSDVG IPAELPESTS  360
QMPEEPVHQR PKTKKQKLPA SDLSAITEEN GAGRSLRSRR KSVNANRLVD ESEVVADDGE  420
YVPEQPNDSV TNGNDEDLLV ENESQGKKVQ KKSKRTVAED GKQVRKSKKT TEASDQAANK  480
KPKKFSHSTR QKRRQVNKAL LEAPEYEIDY QKVPIKDLII LGEHRERLAK KDAAASQIPT  540
TDQSAGASVS NYNEDETYPS DDGAEDNDHQ IGSRAQDSSA YFNYQTYMDK TPSTRWSKQE  600
TELFYEAVQQ FGTDLSLIQQ LFPGRTRRQL KLKYKKEERQ HPFRLHDALT NRSKDHSHFE  660
RVIERLKQIE AEELQKADKD ESTDLTGEEE VEEGTQEINE EEANSEHVEE KEVEAVEQQD  720
VPEMESPVED YDSEDDSWRW SQYKSEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488871e-104GU048887.1 Capsicum annuum clone BAC CaCM511O09_Contig, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619094.10.0PREDICTED: uncharacterized protein LOC104111163 isoform X1
TrEMBLA0A1U7VHN80.0A0A1U7VHN8_NICSY; uncharacterized protein LOC104213954 isoform X1
STRINGXP_009619094.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-50MYB_related family protein