PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619052.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 776aa    MW: 84411.6 Da    PI: 6.9794
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06359378626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     Cr++++ G C+ G++CkF+H+
  XP_009619052.1 359 CRHYLK-GRCSEGEKCKFSHD 378
                     ******.*************7 PP
2zf-CCCH21.83.3e-07412432525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+++a +G+C++G+ C F+H
  XP_009619052.1 412 PCNNYASNGFCSRGADCLFSH 432
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.507353380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6354378IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016354379IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4358378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4358379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.615382406IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027382408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925407435IPR000571Zinc finger, CCCH-type
SMARTSM003560.041410434IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5412432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4412433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MEVDLDLSNR TSDAIQGDKG HARTNDIDDM NRLADKTHSF NDQMVEEPGN RCSTHESEVK  60
ESDPVGPVEL DKELSIDDVC AAIESCFGAD TVAELSQPAE VSGEEIPVPE TRLTEEMEHG  120
LRLKEMELET LISSAGATDL SVHVPMSKEI EEGEVSGDFM VFDESDYDIV NDVRDEKKVE  180
AEKYPADIVD LEDFAFDARD NPPQKRDAYA SSSIDAVDED YTSLGGKFIR KFGEEPKDNV  240
EKVFCSKDVE TRKVCVYDSI LDSGNVAKQV GGDMKLEHLA GFQFGATSAE KAKENKHLID  300
AAEDADIGKK KKKRGPLTKE KRAKKKAKER IKRAEKNRKL GVKRLKLPPV VKPKVVTYCR  360
HYLKGRCSEG EKCKFSHDTT PLTKSKPCCH FARQSCMKGD DCPFDHQLSK YPCNNYASNG  420
FCSRGADCLF SHEITVKIAA VTSPTASNLE LMSPSAPSNS NSLMQINTYG VLHKDVNSSS  480
GSAGLVPGKR TDRTVLEPVQ KPASCTPKGV TFLSHGKSMQ GDARKHEKAG LSSKADDVGK  540
LSCQMIHSKS NNVQKPNGLM KGVSTRTPQG INFLSFGQAT SAEPSGGDTY SGLFNMDYGV  600
KKLLPGGMNN SKEAATCAKR DGSVKDDNQA NLSASLWSMN QMSTRTPHAS APRGISFLSA  660
EKAAQDISRP NEFNRASSPI QRRPSAAEKT SDEMPFRQSS SLFPAGQTLN QSAQKCSVGI  720
ASSSKTPFLA NTQPSSIQKA LQSTLAFAAK FDLGVKFGTS NGSTNITSSI NHSKDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328KRAKKKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619050.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_009619051.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_009619052.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
TrEMBLA0A1S4B8440.0A0A1S4B844_TOBAC; zinc finger CCCH domain-containing protein 65-like isoform X3
STRINGXP_009619048.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.23e-06C3H family protein