PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619048.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 900aa MW: 98126.6 Da PI: 6.5467

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	483	502	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ XP_009619048.1 483 CRHYLK-GRCSEGEKCKFSHD 502 ****.***********7 PP
2	zf-CCCH	21.6	3.9e-07	536	556	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G+C++G+ C F+H XP_009619048.1 536 PCNNYASNGFCSRGADCLFSH 556 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.507	477	504	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	478	502	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0016	478	503	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-4	482	503	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.615	506	530	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	506	532	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.925	531	559	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.041	534	558	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-4	536	557	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-5	536	556	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MENSHIGALN PLQNPFPFPP HRRRPLMSQT YTTLLQILSY NCPTTDSTTE IQKLDVCIDD 60 NGNSKLGKEN EVEELVDHHL IRSDNLLVNG PAHKESDNLV VQQGSGDGNE GSSRSGYRDF 120 TGAQMEVDLD LSNRTSDAIQ GDKGHARTND IDDMNRLADK THSFNDQMVE EPGNRCSTHE 180 SEVKESDPVG PVELDKELSI DDVCAAIESC FGADTVAELS QPAEVSGEEI PVPETRLTEE 240 MEHGLRLKEM ELETLISSAG ATDLSVHVPM SKEIEEGEVS GDFMVFDESD YDIVNDVRDE 300 KKVEAEKYPA DIVDLEDFAF DARDNPPQKR DAYASSSIDA VDEDYTSLGG KFIRKFGEEP 360 KDNVEKVFCS KDVETRKVCV YDSILDSGNV AKQVGGDMKL EHLAGFQFGA TSAEKAKENK 420 HLIDAAEDAD IGKKKKKRGP LTKEKRAKKK AKERIKRAEK NRKLGVKRLK LPPVVKPKVV 480 TYCRHYLKGR CSEGEKCKFS HDTTPLTKSK PCCHFARQSC MKGDDCPFDH QLSKYPCNNY 540 ASNGFCSRGA DCLFSHEITV KIAAVTSPTA SNLELMSPSA PSNSNSLMQI NTYGVLHKDV 600 NSSSGSAGLV PGKRTDRTVL EPVQKPASCT PKGVTFLSHG KSMQGDARKH EKAGLSSKAD 660 DVGKLSCQMI HSKSNNVQKP NGLMKGVSTR TPQGINFLSF GQATSAEPSG GDTYSGLFNM 720 DYGVKKLLPG GMNNSKEAAT CAKRDGSVKD DNQANLSASL WSMNQMSTRT PHASAPRGIS 780 FLSAEKAAQD ISRPNEFNRA SSPIQRRPSA AEKTSDEMPF RQSSSLFPAG QTLNQSAQKC 840 SVGIASSSKT PFLANTQPSS IQKALQSTLA FAAKFDLGVK FGTSNGSTNI TSSINHSKDR

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MENSHIGALN PLQNPFPFPP HRRRPLMSQT YTTLLQILSY NCPTTDSTTE IQKLDVCIDD  60
NGNSKLGKEN EVEELVDHHL IRSDNLLVNG PAHKESDNLV VQQGSGDGNE GSSRSGYRDF  120
TGAQMEVDLD LSNRTSDAIQ GDKGHARTND IDDMNRLADK THSFNDQMVE EPGNRCSTHE  180
SEVKESDPVG PVELDKELSI DDVCAAIESC FGADTVAELS QPAEVSGEEI PVPETRLTEE  240
MEHGLRLKEM ELETLISSAG ATDLSVHVPM SKEIEEGEVS GDFMVFDESD YDIVNDVRDE  300
KKVEAEKYPA DIVDLEDFAF DARDNPPQKR DAYASSSIDA VDEDYTSLGG KFIRKFGEEP  360
KDNVEKVFCS KDVETRKVCV YDSILDSGNV AKQVGGDMKL EHLAGFQFGA TSAEKAKENK  420
HLIDAAEDAD IGKKKKKRGP LTKEKRAKKK AKERIKRAEK NRKLGVKRLK LPPVVKPKVV  480
TYCRHYLKGR CSEGEKCKFS HDTTPLTKSK PCCHFARQSC MKGDDCPFDH QLSKYPCNNY  540
ASNGFCSRGA DCLFSHEITV KIAAVTSPTA SNLELMSPSA PSNSNSLMQI NTYGVLHKDV  600
NSSSGSAGLV PGKRTDRTVL EPVQKPASCT PKGVTFLSHG KSMQGDARKH EKAGLSSKAD  660
DVGKLSCQMI HSKSNNVQKP NGLMKGVSTR TPQGINFLSF GQATSAEPSG GDTYSGLFNM  720
DYGVKKLLPG GMNNSKEAAT CAKRDGSVKD DNQANLSASL WSMNQMSTRT PHASAPRGIS  780
FLSAEKAAQD ISRPNEFNRA SSPIQRRPSA AEKTSDEMPF RQSSSLFPAG QTLNQSAQKC  840
SVGIASSSKT PFLANTQPSS IQKALQSTLA FAAKFDLGVK FGTSNGSTNI TSSINHSKDR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	452	KRAKKKAKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619048.1	0.0	PREDICTED: uncharacterized protein LOC104111140 isoform X1
TrEMBL	A0A1S4B7N7	0.0	A0A1S4B7N7_TOBAC; uncharacterized protein LOC107805435 isoform X1
STRING	XP_009619048.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7740	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	4e-06	C3H family protein