PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009618542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26096.6 Da PI: 9.41 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+tae+Aa+a++ a+++++g+ XP_009618542.1 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDTAAREFRGA 78 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-39 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-13 | 28 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.11E-33 | 28 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-33 | 28 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.105 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSPKEKGTAA MATVTAAGKV NGVSKEMHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT 60 AEDAARAYDT AAREFRGAKA KTNFPIIEPE NVKLANRNCS PSQSSTVENS PPVMPENSPP 120 AVMLDTSPLD LSLGGSRSLF SNGVGRVLFQ NHQFHGSPVA GGIAGCITPV NHMYYLEALQ 180 RERVISSYKK SCRKTAEFIA GCGGGASGES DSSSVIDFMG HDLKPITRPI NLDLNLPPPE 240 NM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-23 | 28 | 86 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB573719 | 0.0 | AB573719.1 Nicotiana tabacum NtERF6b gene for ethylene response factor 6b, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618542.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_016448710.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | E7FKW3 | 1e-180 | E7FKW3_TOBAC; Ethylene response factor 6b | ||||
STRING | XP_009618542.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 4e-29 | ethylene response factor 8 |