PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618368.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 849aa MW: 97559 Da PI: 8.3019

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	100	207	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk++GFs +++s++s+ +g++++++fvCs++g+++e +k+ ++k r +r+ ++t+Cka+l+vk+++dg+w + XP_009618368.1 100 SFYKEYAKSIGFSSIIKASRRSRISGKFIDAKFVCSRYGSKREPSKSviepvpsadgagsipvrRKKGRINRSWSKTDCKACLHVKRRSDGRWII 194 5******************************************99***********99999999********************* PP FAR1 79 tkleleHnHelap 91 ++++eHnHe++p XP_009618368.1 195 CTFVKEHNHEIFP 207 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-24	100	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-29	324	418	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	604	640	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-7	605	639	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-7	615	642	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MVIDLEHPSR DHHKEKEDCG HHTHIRMEHG RGELSGTDGA TVTVSKSVFL DRENAGTSWN 60 EGTSCGAYVL PNADSLAVNC YRSLEPHDVM EFDSKEDAFS FYKEYAKSIG FSSIIKASRR 120 SRISGKFIDA KFVCSRYGSK REPSKSVIEP VPSADGAGSI PVRRKKGRIN RSWSKTDCKA 180 CLHVKRRSDG RWIICTFVKE HNHEIFPDWT NYFRGHRNTD LGKNGADAFH SIRERTKKTF 240 VTMSRQSGVM KKDARQKNVV ANSSPQSLAL DEGDAQVMLE HFLYMQDENP NFFYAMDLNQ 300 EQCLRNVFWV DAKGRIDYNN FSDVVLVDTT YIKNDYKLRF VPFIGVNHHC QSILLGCGLI 360 ANESKSTFVW LMRAWLRAMG GQAPKVILTD QDKTLEEVIA EVLPDSCHCF CLWHVLSNIQ 420 EKLGHVIRQH ENFLSEFNKC ILRSATNELF EKRWWKVVDR FDLRNDLWIK SLYKDRLRWV 480 PTFMNNIFLA GMSTMQRSES VSSLLDKCML CKTTLKEFLD QYKKLLREKY QEEARADSET 540 RYKQPGLKSP SPFEKQMATL YTHTIFKKFQ VEVLGVVACH PKIESDDGAA ATYRVQDFEE 600 NQEFVVVWSE KTSDASCSCH LFEYSGFLCR HVMIVLQMAG VHNIPSKYIL SRWTKGAKSR 660 EKTRNVNLVD SRVQRYYDLC QRAFELGDEG SLSQESYKIV FSVLENFLRR CEAVNDPNLN 720 ESEPCFPPNQ VFIDSNNPSK SNGKNIARKE KVYTEQKIIS VGINNRWQQM GQSGLREPTV 780 DYPFQSHSAM QPMLCLFLPF GAGTIEYKYP SLWQPTKHAG AGTVECNCFN CRLPLSLSTY 840 IPWTGTNVF

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MVIDLEHPSR DHHKEKEDCG HHTHIRMEHG RGELSGTDGA TVTVSKSVFL DRENAGTSWN  60
EGTSCGAYVL PNADSLAVNC YRSLEPHDVM EFDSKEDAFS FYKEYAKSIG FSSIIKASRR  120
SRISGKFIDA KFVCSRYGSK REPSKSVIEP VPSADGAGSI PVRRKKGRIN RSWSKTDCKA  180
CLHVKRRSDG RWIICTFVKE HNHEIFPDWT NYFRGHRNTD LGKNGADAFH SIRERTKKTF  240
VTMSRQSGVM KKDARQKNVV ANSSPQSLAL DEGDAQVMLE HFLYMQDENP NFFYAMDLNQ  300
EQCLRNVFWV DAKGRIDYNN FSDVVLVDTT YIKNDYKLRF VPFIGVNHHC QSILLGCGLI  360
ANESKSTFVW LMRAWLRAMG GQAPKVILTD QDKTLEEVIA EVLPDSCHCF CLWHVLSNIQ  420
EKLGHVIRQH ENFLSEFNKC ILRSATNELF EKRWWKVVDR FDLRNDLWIK SLYKDRLRWV  480
PTFMNNIFLA GMSTMQRSES VSSLLDKCML CKTTLKEFLD QYKKLLREKY QEEARADSET  540
RYKQPGLKSP SPFEKQMATL YTHTIFKKFQ VEVLGVVACH PKIESDDGAA ATYRVQDFEE  600
NQEFVVVWSE KTSDASCSCH LFEYSGFLCR HVMIVLQMAG VHNIPSKYIL SRWTKGAKSR  660
EKTRNVNLVD SRVQRYYDLC QRAFELGDEG SLSQESYKIV FSVLENFLRR CEAVNDPNLN  720
ESEPCFPPNQ VFIDSNNPSK SNGKNIARKE KVYTEQKIIS VGINNRWQQM GQSGLREPTV  780
DYPFQSHSAM QPMLCLFLPF GAGTIEYKYP SLWQPTKHAG AGTVECNCFN CRLPLSLSTY  840
IPWTGTNVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018631238.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X6
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S4D737	0.0	A0A1S4D737_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
STRING	XP_009618368.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]